Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
Vps53Q8CCB4 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Vps53Q8CCB4 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Vps53Q8CCB4 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Vps53Q8CCB4 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Zkscan4-202ENSMUST00000225845 1506 ntBASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
Vps53Q8CCB4 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 AC159301.1-201ENSMUST00000225130 1182 ntBASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Gm43072-201ENSMUST00000200283 1671 ntBASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Vps53Q8CCB4 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Gm29707-201ENSMUST00000196325 491 ntBASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Gm37812-201ENSMUST00000195216 2475 ntBASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC18.49■□□□□ 0.55
Vps53Q8CCB4 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps53Q8CCB4 Slc35b2-202ENSMUST00000223987 1766 ntBASIC18.47■□□□□ 0.55
Vps53Q8CCB4 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms