Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Usp47Q8BY87 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Usp47Q8BY87 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Usp47Q8BY87 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC22.43■■□□□ 1.18
Usp47Q8BY87 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Usp47Q8BY87 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Usp47Q8BY87 Gm19430-201ENSMUST00000193847 2137 ntBASIC22.43■■□□□ 1.18
Usp47Q8BY87 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Usp47Q8BY87 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Usp47Q8BY87 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
Usp47Q8BY87 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Usp47Q8BY87 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Usp47Q8BY87 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC22.42■■□□□ 1.18
Usp47Q8BY87 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Usp47Q8BY87 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Usp47Q8BY87 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC22.42■■□□□ 1.18
Usp47Q8BY87 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Usp47Q8BY87 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC22.42■■□□□ 1.18
Usp47Q8BY87 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Usp47Q8BY87 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Usp47Q8BY87 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Usp47Q8BY87 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Usp47Q8BY87 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC22.42■■□□□ 1.18
Usp47Q8BY87 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Usp47Q8BY87 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Usp47Q8BY87 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
Usp47Q8BY87 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Hivep3-201ENSMUST00000084306 2973 ntBASIC22.41■■□□□ 1.18
Usp47Q8BY87 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
Usp47Q8BY87 AC084391.1-201ENSMUST00000200651 141 ntBASIC22.41■■□□□ 1.18
Usp47Q8BY87 Gm18206-201ENSMUST00000207027 926 ntBASIC22.41■■□□□ 1.18
Usp47Q8BY87 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Usp47Q8BY87 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Gm42473-201ENSMUST00000201056 2291 ntBASIC22.4■■□□□ 1.18
Usp47Q8BY87 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Gm11764-201ENSMUST00000120221 623 ntBASIC22.4■■□□□ 1.18
Usp47Q8BY87 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Gm37153-201ENSMUST00000193637 231 ntBASIC22.4■■□□□ 1.18
Usp47Q8BY87 Gm43514-201ENSMUST00000198852 424 ntBASIC22.4■■□□□ 1.18
Usp47Q8BY87 Gm6443-201ENSMUST00000203599 874 ntBASIC22.4■■□□□ 1.18
Usp47Q8BY87 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC22.4■■□□□ 1.18
Usp47Q8BY87 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Usp47Q8BY87 Grk6-207ENSMUST00000225925 2769 ntBASIC22.4■■□□□ 1.18
Usp47Q8BY87 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC22.39■■□□□ 1.18
Usp47Q8BY87 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.18
Usp47Q8BY87 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
Usp47Q8BY87 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Usp47Q8BY87 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC22.39■■□□□ 1.18
Usp47Q8BY87 Prkcz2-201ENSMUST00000206136 1756 ntBASIC22.39■■□□□ 1.18
Usp47Q8BY87 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Usp47Q8BY87 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Usp47Q8BY87 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Usp47Q8BY87 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Usp47Q8BY87 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Usp47Q8BY87 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Usp47Q8BY87 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Usp47Q8BY87 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Usp47Q8BY87 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms