Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Trim56Q80VI1 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Gm8655-201ENSMUST00000221159 852 ntBASIC18.78■□□□□ 0.6
Trim56Q80VI1 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim56Q80VI1 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Gm4535-201ENSMUST00000182274 558 ntBASIC18.77■□□□□ 0.6
Trim56Q80VI1 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC18.77■□□□□ 0.6
Trim56Q80VI1 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim56Q80VI1 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Gm10355-201ENSMUST00000097146 517 ntBASIC18.77■□□□□ 0.6
Trim56Q80VI1 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Grk6-207ENSMUST00000225925 2769 ntBASIC18.77■□□□□ 0.6
Trim56Q80VI1 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Gm5837-201ENSMUST00000191844 1369 ntBASIC18.77■□□□□ 0.6
Trim56Q80VI1 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Trim56Q80VI1 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim56Q80VI1 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim56Q80VI1 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC18.77■□□□□ 0.59
Trim56Q80VI1 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
Trim56Q80VI1 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Gm7862-201ENSMUST00000121461 292 ntBASIC18.76■□□□□ 0.59
Trim56Q80VI1 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC18.76■□□□□ 0.59
Trim56Q80VI1 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
Trim56Q80VI1 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC18.76■□□□□ 0.59
Trim56Q80VI1 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 AC153526.5-201ENSMUST00000218661 2147 ntBASIC18.76■□□□□ 0.59
Trim56Q80VI1 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim56Q80VI1 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC18.75■□□□□ 0.59
Trim56Q80VI1 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC18.75■□□□□ 0.59
Trim56Q80VI1 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC18.75■□□□□ 0.59
Trim56Q80VI1 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim56Q80VI1 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Gm25990-201ENSMUST00000102440 86 ntBASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms