Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Lig3P97386 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC17.34■□□□□ 0.37
Lig3P97386 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC17.34■□□□□ 0.37
Lig3P97386 Gm11336-201ENSMUST00000118168 334 ntBASIC17.34■□□□□ 0.37
Lig3P97386 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC17.34■□□□□ 0.37
Lig3P97386 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Gm5364-201ENSMUST00000216789 889 ntBASIC17.34■□□□□ 0.37
Lig3P97386 Gm6296-201ENSMUST00000222599 943 ntBASIC17.34■□□□□ 0.37
Lig3P97386 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Lig3P97386 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lig3P97386 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC17.34■□□□□ 0.37
Lig3P97386 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lig3P97386 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lig3P97386 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lig3P97386 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lig3P97386 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lig3P97386 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.33■□□□□ 0.36
Lig3P97386 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lig3P97386 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lig3P97386 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lig3P97386 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lig3P97386 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lig3P97386 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lig3P97386 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lig3P97386 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lig3P97386 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC17.33■□□□□ 0.36
Lig3P97386 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Lig3P97386 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lig3P97386 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lig3P97386 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lig3P97386 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lig3P97386 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lig3P97386 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Lig3P97386 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Lig3P97386 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lig3P97386 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
Lig3P97386 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC17.32■□□□□ 0.36
Lig3P97386 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC17.32■□□□□ 0.36
Lig3P97386 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lig3P97386 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lig3P97386 Gm6736-201ENSMUST00000166583 948 ntBASIC17.32■□□□□ 0.36
Lig3P97386 Gm5264-201ENSMUST00000190584 848 ntBASIC17.32■□□□□ 0.36
Lig3P97386 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lig3P97386 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lig3P97386 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lig3P97386 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lig3P97386 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC17.32■□□□□ 0.36
Lig3P97386 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Lig3P97386 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC17.32■□□□□ 0.36
Lig3P97386 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lig3P97386 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lig3P97386 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Lig3P97386 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
Lig3P97386 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC17.31■□□□□ 0.36
Lig3P97386 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.31■□□□□ 0.36
Lig3P97386 Gm12350-201ENSMUST00000121208 462 ntBASIC17.31■□□□□ 0.36
Lig3P97386 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC17.31■□□□□ 0.36
Lig3P97386 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Lig3P97386 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Gm19430-201ENSMUST00000193847 2137 ntBASIC17.31■□□□□ 0.36
Lig3P97386 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC17.31■□□□□ 0.36
Lig3P97386 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC17.31■□□□□ 0.36
Lig3P97386 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC17.31■□□□□ 0.36
Lig3P97386 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.31■□□□□ 0.36
Lig3P97386 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Lig3P97386 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lig3P97386 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms