Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Lmx1bO88609 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC14.43□□□□□ -0.1
Lmx1bO88609 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Lmx1bO88609 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC14.42□□□□□ -0.1
Lmx1bO88609 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Lmx1bO88609 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC14.42□□□□□ -0.1
Lmx1bO88609 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC14.42□□□□□ -0.1
Lmx1bO88609 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Gm13830-205ENSMUST00000201195 1155 ntBASIC14.42□□□□□ -0.1
Lmx1bO88609 Gm18195-201ENSMUST00000207604 706 ntBASIC14.42□□□□□ -0.1
Lmx1bO88609 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC14.42□□□□□ -0.1
Lmx1bO88609 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lmx1bO88609 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Lmx1bO88609 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC14.41□□□□□ -0.1
Lmx1bO88609 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
Lmx1bO88609 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC14.41□□□□□ -0.1
Lmx1bO88609 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Lmx1bO88609 Gm18733-201ENSMUST00000173950 856 ntBASIC14.41□□□□□ -0.1
Lmx1bO88609 AW822252-206ENSMUST00000208904 237 ntBASIC14.41□□□□□ -0.1
Lmx1bO88609 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC14.41□□□□□ -0.1
Lmx1bO88609 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Lmx1bO88609 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Lmx1bO88609 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Lmx1bO88609 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC14.4□□□□□ -0.1
Lmx1bO88609 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Gm7862-201ENSMUST00000121461 292 ntBASIC14.4□□□□□ -0.1
Lmx1bO88609 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.4□□□□□ -0.1
Lmx1bO88609 Gm6443-201ENSMUST00000203599 874 ntBASIC14.4□□□□□ -0.1
Lmx1bO88609 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Lmx1bO88609 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Lmx1bO88609 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lmx1bO88609 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Gm18856-201ENSMUST00000178096 1374 ntBASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms