Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1i3O35627 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1i3O35627 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.12■□□□□ 0.33
Nr1i3O35627 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1i3O35627 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1i3O35627 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1i3O35627 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1i3O35627 Gm6623-201ENSMUST00000173570 544 ntBASIC17.12■□□□□ 0.33
Nr1i3O35627 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC17.12■□□□□ 0.33
Nr1i3O35627 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.12■□□□□ 0.33
Nr1i3O35627 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC17.12■□□□□ 0.33
Nr1i3O35627 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1i3O35627 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Nr1i3O35627 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1i3O35627 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Nr1i3O35627 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1i3O35627 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Nr1i3O35627 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1i3O35627 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1i3O35627 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.12■□□□□ 0.33
Nr1i3O35627 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1i3O35627 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1i3O35627 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Nr1i3O35627 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Gm9867-201ENSMUST00000192212 2647 ntBASIC17.11■□□□□ 0.33
Nr1i3O35627 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Nr1i3O35627 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Nr1i3O35627 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC17.11■□□□□ 0.33
Nr1i3O35627 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.11■□□□□ 0.33
Nr1i3O35627 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
Nr1i3O35627 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
Nr1i3O35627 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Nr1i3O35627 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.11■□□□□ 0.33
Nr1i3O35627 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nr1i3O35627 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Nr1i3O35627 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Nr1i3O35627 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Nr1i3O35627 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Nr1i3O35627 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nr1i3O35627 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC17.09■□□□□ 0.33
Nr1i3O35627 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nr1i3O35627 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nr1i3O35627 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nr1i3O35627 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nr1i3O35627 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nr1i3O35627 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nr1i3O35627 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC17.08■□□□□ 0.33
Nr1i3O35627 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms