Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Gm10584-201ENSMUST00000207036 2628 ntBASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Gm13168-201ENSMUST00000121771 632 ntBASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 AC135963.1-201ENSMUST00000211640 717 ntBASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 AC132265.1-201ENSMUST00000219233 1665 ntBASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-1A0A075B5Z8 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Mir5122-201ENSMUST00000175004 89 ntBASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-1A0A075B5Z8 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Gm10653-202ENSMUST00000139570 835 ntBASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Gm7213-201ENSMUST00000215977 950 ntBASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trav6-1A0A075B5Z8 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms