Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-0.93□□□□□ -2.56
NKX2-1P43699 RNU6-986P-201ENST00000363133 102 ntBASIC-0.94□□□□□ -2.56
NKX2-1P43699 RNU6-803P-201ENST00000516034 102 ntBASIC-0.94□□□□□ -2.56
NKX2-1P43699 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-0.94□□□□□ -2.56
NKX2-1P43699 Y_RNA.349-201ENST00000365406 102 ntBASIC-0.95□□□□□ -2.56
NKX2-1P43699 RNU6-936P-201ENST00000384005 107 ntBASIC-0.95□□□□□ -2.56
NKX2-1P43699 Y_RNA.502-201ENST00000384478 113 ntBASIC-0.95□□□□□ -2.56
NKX2-1P43699 TARS-215ENST00000626210 201 ntTSL 5 BASIC-0.95□□□□□ -2.56
NKX2-1P43699 Y_RNA.379-201ENST00000365653 102 ntBASIC-0.96□□□□□ -2.56
NKX2-1P43699 Y_RNA.186-201ENST00000363899 92 ntBASIC-0.97□□□□□ -2.56
NKX2-1P43699 RNU6-753P-201ENST00000363926 107 ntBASIC-0.97□□□□□ -2.56
NKX2-1P43699 Y_RNA.382-201ENST00000365672 114 ntBASIC-0.97□□□□□ -2.56
NKX2-1P43699 Y_RNA.63-201ENST00000362841 102 ntBASIC-0.98□□□□□ -2.57
NKX2-1P43699 MIR548AL-201ENST00000578416 97 ntBASIC-0.98□□□□□ -2.57
NKX2-1P43699 Y_RNA.591-201ENST00000410228 104 ntBASIC-0.99□□□□□ -2.57
NKX2-1P43699 AC097484.2-201ENST00000509147 251 ntBASIC-0.99□□□□□ -2.57
NKX2-1P43699 Y_RNA.397-201ENST00000383950 98 ntBASIC-1□□□□□ -2.57
NKX2-1P43699 RNU6-230P-201ENST00000362457 104 ntBASIC-1.01□□□□□ -2.57
NKX2-1P43699 RNU6-788P-201ENST00000390967 104 ntBASIC-1.01□□□□□ -2.57
NKX2-1P43699 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.01□□□□□ -2.57
NKX2-1P43699 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.01□□□□□ -2.57
NKX2-1P43699 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.01□□□□□ -2.57
NKX2-1P43699 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.01□□□□□ -2.57
NKX2-1P43699 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.01□□□□□ -2.57
NKX2-1P43699 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.01□□□□□ -2.57
NKX2-1P43699 MIR379-201ENST00000362218 67 ntBASIC-1.02□□□□□ -2.57
NKX2-1P43699 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.02□□□□□ -2.57
NKX2-1P43699 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.03□□□□□ -2.57
NKX2-1P43699 RNU6-838P-201ENST00000363399 108 ntBASIC-1.03□□□□□ -2.57
NKX2-1P43699 RNU6-194P-201ENST00000363862 105 ntBASIC-1.03□□□□□ -2.57
NKX2-1P43699 RNU6-141P-201ENST00000410499 105 ntBASIC-1.03□□□□□ -2.57
NKX2-1P43699 RNU6-176P-201ENST00000517196 105 ntBASIC-1.03□□□□□ -2.57
NKX2-1P43699 MIR548F3-201ENST00000408509 87 ntBASIC-1.04□□□□□ -2.58
NKX2-1P43699 RNU6-614P-201ENST00000384369 107 ntBASIC-1.05□□□□□ -2.58
NKX2-1P43699 SNORD115.2-201ENST00000391126 59 ntBASIC-1.05□□□□□ -2.58
NKX2-1P43699 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.05□□□□□ -2.58
NKX2-1P43699 U6.59-201ENST00000615686 107 ntBASIC-1.05□□□□□ -2.58
NKX2-1P43699 FTX_4.1-201ENST00000616291 147 ntBASIC-1.05□□□□□ -2.58
NKX2-1P43699 MIR4317-201ENST00000637586 65 ntBASIC-1.05□□□□□ -2.58
NKX2-1P43699 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.06□□□□□ -2.58
NKX2-1P43699 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.06□□□□□ -2.58
NKX2-1P43699 MIR545-201ENST00000385085 106 ntBASIC-1.07□□□□□ -2.58
NKX2-1P43699 RNU6-930P-201ENST00000390938 100 ntBASIC-1.07□□□□□ -2.58
NKX2-1P43699 MTND4LP19-201ENST00000403051 166 ntBASIC-1.08□□□□□ -2.58
NKX2-1P43699 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.09□□□□□ -2.58
NKX2-1P43699 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.09□□□□□ -2.58
NKX2-1P43699 Y_RNA.511-201ENST00000384514 103 ntBASIC-1.09□□□□□ -2.58
NKX2-1P43699 RNU6-808P-201ENST00000391233 108 ntBASIC-1.09□□□□□ -2.58
NKX2-1P43699 MIR4748-201ENST00000578076 82 ntBASIC-1.09□□□□□ -2.58
NKX2-1P43699 RNA5SP224-201ENST00000365069 126 ntBASIC-1.1□□□□□ -2.59
NKX2-1P43699 RNU6-59P-201ENST00000384787 107 ntBASIC-1.1□□□□□ -2.59
NKX2-1P43699 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.1□□□□□ -2.59
NKX2-1P43699 RNU6-345P-201ENST00000517001 107 ntBASIC-1.12□□□□□ -2.59
NKX2-1P43699 RNU6-822P-201ENST00000362707 106 ntBASIC-1.13□□□□□ -2.59
NKX2-1P43699 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.13□□□□□ -2.59
NKX2-1P43699 RNU6-854P-201ENST00000364036 107 ntBASIC-1.13□□□□□ -2.59
NKX2-1P43699 RNU6-836P-201ENST00000362920 107 ntBASIC-1.14□□□□□ -2.59
NKX2-1P43699 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.14□□□□□ -2.59
NKX2-1P43699 SNORD45C-201ENST00000383893 79 ntBASIC-1.14□□□□□ -2.59
NKX2-1P43699 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.16□□□□□ -2.6
NKX2-1P43699 RNA5SP106-201ENST00000517274 100 ntBASIC-1.16□□□□□ -2.6
NKX2-1P43699 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.16□□□□□ -2.6
NKX2-1P43699 RNU6-1277P-201ENST00000364561 107 ntBASIC-1.17□□□□□ -2.6
NKX2-1P43699 MIR656-201ENST00000385224 78 ntBASIC-1.19□□□□□ -2.6
NKX2-1P43699 RNU6-737P-201ENST00000365370 107 ntBASIC-1.2□□□□□ -2.6
NKX2-1P43699 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.2□□□□□ -2.6
NKX2-1P43699 MIR5693-201ENST00000577722 73 ntBASIC-1.21□□□□□ -2.6
NKX2-1P43699 RNY4P9-201ENST00000363194 97 ntBASIC-1.22□□□□□ -2.6
NKX2-1P43699 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.22□□□□□ -2.6
NKX2-1P43699 MIR124-1-201ENST00000385275 85 ntBASIC-1.22□□□□□ -2.6
NKX2-1P43699 Y_RNA.658-201ENST00000515990 97 ntBASIC-1.22□□□□□ -2.6
NKX2-1P43699 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.23□□□□□ -2.61
NKX2-1P43699 AL731768.1-201ENST00000603124 139 ntBASIC-1.23□□□□□ -2.61
NKX2-1P43699 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.24□□□□□ -2.61
NKX2-1P43699 RNY4P10-201ENST00000365571 96 ntBASIC-1.25□□□□□ -2.61
NKX2-1P43699 Y_RNA.520-201ENST00000384556 102 ntBASIC-1.26□□□□□ -2.61
NKX2-1P43699 RNU4-37P-201ENST00000410214 84 ntBASIC-1.26□□□□□ -2.61
NKX2-1P43699 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.27□□□□□ -2.61
NKX2-1P43699 MIR509-1-201ENST00000385265 94 ntBASIC-1.28□□□□□ -2.61
NKX2-1P43699 MIR509-2-201ENST00000390724 91 ntBASIC-1.28□□□□□ -2.61
NKX2-1P43699 SNORD115-45-201ENST00000391078 81 ntBASIC-1.28□□□□□ -2.61
NKX2-1P43699 SNORD111B-201ENST00000408587 80 ntBASIC-1.28□□□□□ -2.61
NKX2-1P43699 RNU6-987P-201ENST00000384759 104 ntBASIC-1.29□□□□□ -2.62
NKX2-1P43699 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.29□□□□□ -2.62
NKX2-1P43699 MIR548AH-201ENST00000637109 76 ntBASIC-1.29□□□□□ -2.62
NKX2-1P43699 RNU6-1128P-201ENST00000362825 109 ntBASIC-1.3□□□□□ -2.62
NKX2-1P43699 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.31□□□□□ -2.62
NKX2-1P43699 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.31□□□□□ -2.62
NKX2-1P43699 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.32□□□□□ -2.62
NKX2-1P43699 RNY4P25-201ENST00000459254 96 ntBASIC-1.34□□□□□ -2.62
NKX2-1P43699 Y_RNA.657-201ENST00000515983 102 ntBASIC-1.36□□□□□ -2.63
NKX2-1P43699 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.37□□□□□ -2.63
NKX2-1P43699 AL359920.1-201ENST00000618332 176 ntBASIC-1.37□□□□□ -2.63
NKX2-1P43699 Y_RNA.406-201ENST00000383984 100 ntBASIC-1.38□□□□□ -2.63
NKX2-1P43699 U6.103-201ENST00000637085 61 ntBASIC-1.38□□□□□ -2.63
NKX2-1P43699 RNU6-485P-201ENST00000363475 107 ntBASIC-1.4□□□□□ -2.63
NKX2-1P43699 RNU6-422P-201ENST00000384632 107 ntBASIC-1.4□□□□□ -2.63
NKX2-1P43699 RNU6-1044P-201ENST00000384755 107 ntBASIC-1.41□□□□□ -2.64
NKX2-1P43699 RNU6-724P-201ENST00000390958 105 ntBASIC-1.42□□□□□ -2.64
NKX2-1P43699 RNU6-1024P-201ENST00000384199 107 ntBASIC-1.43□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms