Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC079150.2-201ENST00000443733 78 ntBASIC-1.98□□□□□ -2.73
SHMT1P34896 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.98□□□□□ -2.73
SHMT1P34896 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.98□□□□□ -2.73
SHMT1P34896 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.99□□□□□ -2.73
SHMT1P34896 RNU6-141P-201ENST00000410499 105 ntBASIC-1.99□□□□□ -2.73
SHMT1P34896 MIR548AL-201ENST00000578416 97 ntBASIC-2□□□□□ -2.73
SHMT1P34896 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.01□□□□□ -2.73
SHMT1P34896 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.02□□□□□ -2.73
SHMT1P34896 MIR496-201ENST00000385226 102 ntBASIC-2.02□□□□□ -2.73
SHMT1P34896 RNU6-119P-201ENST00000364882 107 ntBASIC-2.04□□□□□ -2.74
SHMT1P34896 RNU6-345P-201ENST00000517001 107 ntBASIC-2.04□□□□□ -2.74
SHMT1P34896 RNY4P9-201ENST00000363194 97 ntBASIC-2.06□□□□□ -2.74
SHMT1P34896 MIR4317-201ENST00000637586 65 ntBASIC-2.07□□□□□ -2.74
SHMT1P34896 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.11□□□□□ -2.75
SHMT1P34896 RNA5SP224-201ENST00000365069 126 ntBASIC-2.11□□□□□ -2.75
SHMT1P34896 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.11□□□□□ -2.75
SHMT1P34896 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.11□□□□□ -2.75
SHMT1P34896 RNU6-499P-201ENST00000365615 107 ntBASIC-2.12□□□□□ -2.75
SHMT1P34896 RNU6-822P-201ENST00000362707 106 ntBASIC-2.13□□□□□ -2.75
SHMT1P34896 RNU6-838P-201ENST00000363399 108 ntBASIC-2.13□□□□□ -2.75
SHMT1P34896 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.13□□□□□ -2.75
SHMT1P34896 RNU6-1008P-201ENST00000384160 104 ntBASIC-2.14□□□□□ -2.75
SHMT1P34896 RNU6-1326P-201ENST00000391262 107 ntBASIC-2.14□□□□□ -2.75
SHMT1P34896 RNU6-808P-201ENST00000391233 108 ntBASIC-2.15□□□□□ -2.75
SHMT1P34896 Y_RNA.206-201ENST00000364136 102 ntBASIC-2.16□□□□□ -2.76
SHMT1P34896 Y_RNA.379-201ENST00000365653 102 ntBASIC-2.16□□□□□ -2.76
SHMT1P34896 RNU6-1204P-201ENST00000363948 107 ntBASIC-2.17□□□□□ -2.76
SHMT1P34896 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.18□□□□□ -2.76
SHMT1P34896 Y_RNA.260-201ENST00000364628 101 ntBASIC-2.18□□□□□ -2.76
SHMT1P34896 Y_RNA.345-201ENST00000365384 92 ntBASIC-2.18□□□□□ -2.76
SHMT1P34896 Y_RNA.134-201ENST00000363435 105 ntBASIC-2.19□□□□□ -2.76
SHMT1P34896 RNU6-986P-201ENST00000363133 102 ntBASIC-2.21□□□□□ -2.76
SHMT1P34896 AL731768.1-201ENST00000603124 139 ntBASIC-2.21□□□□□ -2.76
SHMT1P34896 RNU6-753P-201ENST00000363926 107 ntBASIC-2.22□□□□□ -2.76
SHMT1P34896 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.22□□□□□ -2.76
SHMT1P34896 MIR656-201ENST00000385224 78 ntBASIC-2.22□□□□□ -2.76
SHMT1P34896 RNU6-836P-201ENST00000362920 107 ntBASIC-2.23□□□□□ -2.77
SHMT1P34896 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.23□□□□□ -2.77
SHMT1P34896 SNORD45C-201ENST00000383893 79 ntBASIC-2.24□□□□□ -2.77
SHMT1P34896 RNU6-936P-201ENST00000384005 107 ntBASIC-2.24□□□□□ -2.77
SHMT1P34896 RNU6-59P-201ENST00000384787 107 ntBASIC-2.24□□□□□ -2.77
SHMT1P34896 MIR548F3-201ENST00000408509 87 ntBASIC-2.24□□□□□ -2.77
SHMT1P34896 RNA5SP93-201ENST00000362525 114 ntBASIC-2.25□□□□□ -2.77
SHMT1P34896 SNORD54-201ENST00000459159 67 ntBASIC-2.25□□□□□ -2.77
SHMT1P34896 RNU6-230P-201ENST00000362457 104 ntBASIC-2.26□□□□□ -2.77
SHMT1P34896 RNU6-854P-201ENST00000364036 107 ntBASIC-2.26□□□□□ -2.77
SHMT1P34896 RNU6-788P-201ENST00000390967 104 ntBASIC-2.26□□□□□ -2.77
SHMT1P34896 SNORD115.2-201ENST00000391126 59 ntBASIC-2.26□□□□□ -2.77
SHMT1P34896 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.28□□□□□ -2.77
SHMT1P34896 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.29□□□□□ -2.78
SHMT1P34896 MIR5693-201ENST00000577722 73 ntBASIC-2.29□□□□□ -2.78
SHMT1P34896 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.32□□□□□ -2.78
SHMT1P34896 RNU6-930P-201ENST00000390938 100 ntBASIC-2.32□□□□□ -2.78
SHMT1P34896 RNY4P7-201ENST00000364600 96 ntBASIC-2.33□□□□□ -2.78
SHMT1P34896 RNY4P25-201ENST00000459254 96 ntBASIC-2.35□□□□□ -2.79
SHMT1P34896 Y_RNA.335-201ENST00000365299 96 ntBASIC-2.36□□□□□ -2.79
SHMT1P34896 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.37□□□□□ -2.79
SHMT1P34896 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.37□□□□□ -2.79
SHMT1P34896 MIR545-201ENST00000385085 106 ntBASIC-2.38□□□□□ -2.79
SHMT1P34896 RNU6-614P-201ENST00000384369 107 ntBASIC-2.39□□□□□ -2.79
SHMT1P34896 RNU6-1340P-201ENST00000384438 107 ntBASIC-2.39□□□□□ -2.79
SHMT1P34896 U6.59-201ENST00000615686 107 ntBASIC-2.39□□□□□ -2.79
SHMT1P34896 RNU6-737P-201ENST00000365370 107 ntBASIC-2.4□□□□□ -2.79
SHMT1P34896 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.41□□□□□ -2.8
SHMT1P34896 AL359920.1-201ENST00000618332 176 ntBASIC-2.41□□□□□ -2.8
SHMT1P34896 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.43□□□□□ -2.8
SHMT1P34896 DLEU2_4.2-201ENST00000616613 58 ntBASIC-2.43□□□□□ -2.8
SHMT1P34896 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.44□□□□□ -2.8
SHMT1P34896 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.45□□□□□ -2.8
SHMT1P34896 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.45□□□□□ -2.8
SHMT1P34896 MIR124-1-201ENST00000385275 85 ntBASIC-2.47□□□□□ -2.8
SHMT1P34896 Y_RNA.204-201ENST00000364112 102 ntBASIC-2.48□□□□□ -2.81
SHMT1P34896 RNU6-1161P-201ENST00000516176 102 ntBASIC-2.49□□□□□ -2.81
SHMT1P34896 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.49□□□□□ -2.81
SHMT1P34896 Y_RNA.266-201ENST00000364678 96 ntBASIC-2.52□□□□□ -2.81
SHMT1P34896 RNU6-1044P-201ENST00000384755 107 ntBASIC-2.52□□□□□ -2.81
SHMT1P34896 SNORD114-13-201ENST00000364377 74 ntBASIC-2.54□□□□□ -2.82
SHMT1P34896 SNORD115-45-201ENST00000391078 81 ntBASIC-2.55□□□□□ -2.82
SHMT1P34896 MIR548AH-201ENST00000637109 76 ntBASIC-2.56□□□□□ -2.82
SHMT1P34896 MTND4LP19-201ENST00000403051 166 ntBASIC-2.57□□□□□ -2.82
SHMT1P34896 RNY4-201ENST00000516507 96 ntBASIC-2.62□□□□□ -2.83
SHMT1P34896 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.64□□□□□ -2.83
SHMT1P34896 Y_RNA.406-201ENST00000383984 100 ntBASIC-2.65□□□□□ -2.83
SHMT1P34896 RNU6-1043P-201ENST00000410355 99 ntBASIC-2.65□□□□□ -2.83
SHMT1P34896 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.66□□□□□ -2.84
SHMT1P34896 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.66□□□□□ -2.84
SHMT1P34896 RNU6-422P-201ENST00000384632 107 ntBASIC-2.68□□□□□ -2.84
SHMT1P34896 RNU6-803P-201ENST00000516034 102 ntBASIC-2.68□□□□□ -2.84
SHMT1P34896 MIR509-1-201ENST00000385265 94 ntBASIC-2.71□□□□□ -2.84
SHMT1P34896 MIR509-2-201ENST00000390724 91 ntBASIC-2.71□□□□□ -2.84
SHMT1P34896 SNORD111B-201ENST00000408587 80 ntBASIC-2.74□□□□□ -2.85
SHMT1P34896 Y_RNA.511-201ENST00000384514 103 ntBASIC-2.79□□□□□ -2.86
SHMT1P34896 RNA5SP106-201ENST00000517274 100 ntBASIC-2.79□□□□□ -2.86
SHMT1P34896 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-2.8□□□□□ -2.86
SHMT1P34896 RNY4P10-201ENST00000365571 96 ntBASIC-2.81□□□□□ -2.86
SHMT1P34896 U6.103-201ENST00000637085 61 ntBASIC-2.81□□□□□ -2.86
SHMT1P34896 RNU6-485P-201ENST00000363475 107 ntBASIC-2.84□□□□□ -2.86
SHMT1P34896 RNU4-37P-201ENST00000410214 84 ntBASIC-2.85□□□□□ -2.87
SHMT1P34896 RNU6-987P-201ENST00000384759 104 ntBASIC-2.86□□□□□ -2.87
SHMT1P34896 Y_RNA.657-201ENST00000515983 102 ntBASIC-2.87□□□□□ -2.87
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms