Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU6-576P-201ENST00000390854 102 ntBASIC-1.09□□□□□ -2.58
CCDC87Q9NVE4 MIR4426-201ENST00000640330 63 ntBASIC-1.09□□□□□ -2.58
CCDC87Q9NVE4 SNORA17.4-201ENST00000391287 132 ntBASIC-1.1□□□□□ -2.59
CCDC87Q9NVE4 AC018880.2-201ENST00000414265 201 ntBASIC-1.1□□□□□ -2.59
CCDC87Q9NVE4 RNU6-176P-201ENST00000517196 105 ntBASIC-1.1□□□□□ -2.59
CCDC87Q9NVE4 U4.2-201ENST00000618561 85 ntBASIC-1.11□□□□□ -2.59
CCDC87Q9NVE4 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.11□□□□□ -2.59
CCDC87Q9NVE4 MIR202-201ENST00000362219 110 ntBASIC-1.12□□□□□ -2.59
CCDC87Q9NVE4 RNU6-563P-201ENST00000364872 108 ntBASIC-1.13□□□□□ -2.59
CCDC87Q9NVE4 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.13□□□□□ -2.59
CCDC87Q9NVE4 MIR1207-201ENST00000408249 87 ntBASIC-1.13□□□□□ -2.59
CCDC87Q9NVE4 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.13□□□□□ -2.59
CCDC87Q9NVE4 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.13□□□□□ -2.59
CCDC87Q9NVE4 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.13□□□□□ -2.59
CCDC87Q9NVE4 RNU6-742P-201ENST00000365289 107 ntBASIC-1.14□□□□□ -2.59
CCDC87Q9NVE4 AC120024.2-201ENST00000576526 175 ntBASIC-1.14□□□□□ -2.59
CCDC87Q9NVE4 MIR3165-201ENST00000579874 75 ntBASIC-1.15□□□□□ -2.59
CCDC87Q9NVE4 MIR4306-201ENST00000583390 91 ntBASIC-1.15□□□□□ -2.59
CCDC87Q9NVE4 RNU6-79P-201ENST00000362511 107 ntBASIC-1.16□□□□□ -2.6
CCDC87Q9NVE4 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.16□□□□□ -2.6
CCDC87Q9NVE4 MIR548F3-201ENST00000408509 87 ntBASIC-1.17□□□□□ -2.6
CCDC87Q9NVE4 MIR3115-201ENST00000577915 68 ntBASIC-1.17□□□□□ -2.6
CCDC87Q9NVE4 SNORD114-3-201ENST00000364969 75 ntBASIC-1.18□□□□□ -2.6
CCDC87Q9NVE4 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.18□□□□□ -2.6
CCDC87Q9NVE4 RNU6-300P-201ENST00000459080 104 ntBASIC-1.19□□□□□ -2.6
CCDC87Q9NVE4 RNA5SP461-201ENST00000516451 104 ntBASIC-1.19□□□□□ -2.6
CCDC87Q9NVE4 MIR6502-201ENST00000617296 76 ntBASIC-1.19□□□□□ -2.6
CCDC87Q9NVE4 AC013734.1-201ENST00000619329 111 ntBASIC-1.2□□□□□ -2.6
CCDC87Q9NVE4 MIR548N-201ENST00000408742 75 ntBASIC-1.21□□□□□ -2.6
CCDC87Q9NVE4 MIR365A-201ENST00000362260 87 ntBASIC-1.25□□□□□ -2.61
CCDC87Q9NVE4 MIR4520-1-201ENST00000582609 70 ntBASIC-1.26□□□□□ -2.61
CCDC87Q9NVE4 MIR4317-201ENST00000637586 65 ntBASIC-1.27□□□□□ -2.61
CCDC87Q9NVE4 RNU6-400P-201ENST00000391173 106 ntBASIC-1.28□□□□□ -2.61
CCDC87Q9NVE4 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.29□□□□□ -2.62
CCDC87Q9NVE4 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.3□□□□□ -2.62
CCDC87Q9NVE4 MIR1285-2-201ENST00000408311 88 ntBASIC-1.3□□□□□ -2.62
CCDC87Q9NVE4 U6.97-201ENST00000636904 101 ntBASIC-1.3□□□□□ -2.62
CCDC87Q9NVE4 SNORD18C-201ENST00000362704 69 ntBASIC-1.31□□□□□ -2.62
CCDC87Q9NVE4 RNU6-706P-201ENST00000517229 104 ntBASIC-1.31□□□□□ -2.62
CCDC87Q9NVE4 AC138207.3-201ENST00000585289 166 ntBASIC-1.31□□□□□ -2.62
CCDC87Q9NVE4 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.32□□□□□ -2.62
CCDC87Q9NVE4 MIR581-201ENST00000384895 96 ntBASIC-1.32□□□□□ -2.62
CCDC87Q9NVE4 RNA5SP180-201ENST00000516181 101 ntBASIC-1.33□□□□□ -2.62
CCDC87Q9NVE4 MIR4441-201ENST00000582623 100 ntBASIC-1.34□□□□□ -2.62
CCDC87Q9NVE4 RNU6-695P-201ENST00000391157 104 ntBASIC-1.35□□□□□ -2.63
CCDC87Q9NVE4 MIR5591-201ENST00000578248 65 ntBASIC-1.35□□□□□ -2.63
CCDC87Q9NVE4 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.36□□□□□ -2.63
CCDC87Q9NVE4 RNA5SP86-201ENST00000390869 98 ntBASIC-1.36□□□□□ -2.63
CCDC87Q9NVE4 MIR487B-201ENST00000385021 84 ntBASIC-1.37□□□□□ -2.63
CCDC87Q9NVE4 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.37□□□□□ -2.63
CCDC87Q9NVE4 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.38□□□□□ -2.63
CCDC87Q9NVE4 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.38□□□□□ -2.63
CCDC87Q9NVE4 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.38□□□□□ -2.63
CCDC87Q9NVE4 MIR548H4-201ENST00000408689 111 ntBASIC-1.38□□□□□ -2.63
CCDC87Q9NVE4 HLA-S-202ENST00000425174 53 ntBASIC-1.39□□□□□ -2.63
CCDC87Q9NVE4 MIR3123-201ENST00000583417 75 ntBASIC-1.39□□□□□ -2.63
CCDC87Q9NVE4 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.4□□□□□ -2.63
CCDC87Q9NVE4 MIR545-201ENST00000385085 106 ntBASIC-1.4□□□□□ -2.63
CCDC87Q9NVE4 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.41□□□□□ -2.64
CCDC87Q9NVE4 MIR4770-201ENST00000579149 58 ntBASIC-1.41□□□□□ -2.64
CCDC87Q9NVE4 MIR379-201ENST00000362218 67 ntBASIC-1.42□□□□□ -2.64
CCDC87Q9NVE4 RNU6-226P-201ENST00000363778 107 ntBASIC-1.43□□□□□ -2.64
CCDC87Q9NVE4 RNU6-822P-201ENST00000362707 106 ntBASIC-1.45□□□□□ -2.64
CCDC87Q9NVE4 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.45□□□□□ -2.64
CCDC87Q9NVE4 MIR548H1-201ENST00000408610 102 ntBASIC-1.46□□□□□ -2.64
CCDC87Q9NVE4 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.46□□□□□ -2.64
CCDC87Q9NVE4 RNU6-68P-201ENST00000516576 104 ntBASIC-1.47□□□□□ -2.64
CCDC87Q9NVE4 MIR1246-201ENST00000636535 73 ntBASIC-1.47□□□□□ -2.64
CCDC87Q9NVE4 RNU6-986P-201ENST00000363133 102 ntBASIC-1.48□□□□□ -2.65
CCDC87Q9NVE4 RNU6-841P-201ENST00000383872 107 ntBASIC-1.49□□□□□ -2.65
CCDC87Q9NVE4 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.49□□□□□ -2.65
CCDC87Q9NVE4 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.49□□□□□ -2.65
CCDC87Q9NVE4 MIR548W-201ENST00000581970 74 ntBASIC-1.5□□□□□ -2.65
CCDC87Q9NVE4 MIR548AM-201ENST00000584298 74 ntBASIC-1.51□□□□□ -2.65
CCDC87Q9NVE4 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.51□□□□□ -2.65
CCDC87Q9NVE4 RNY4P27-201ENST00000363341 96 ntBASIC-1.52□□□□□ -2.65
CCDC87Q9NVE4 snoU13.10-201ENST00000459301 103 ntBASIC-1.52□□□□□ -2.65
CCDC87Q9NVE4 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.55□□□□□ -2.66
CCDC87Q9NVE4 AC108019.1-201ENST00000512540 175 ntBASIC-1.57□□□□□ -2.66
CCDC87Q9NVE4 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.58□□□□□ -2.66
CCDC87Q9NVE4 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.58□□□□□ -2.66
CCDC87Q9NVE4 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.59□□□□□ -2.66
CCDC87Q9NVE4 RNU6-59P-201ENST00000384787 107 ntBASIC-1.59□□□□□ -2.66
CCDC87Q9NVE4 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.59□□□□□ -2.66
CCDC87Q9NVE4 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.6□□□□□ -2.67
CCDC87Q9NVE4 MIR4756-201ENST00000577874 78 ntBASIC-1.6□□□□□ -2.67
CCDC87Q9NVE4 SNORD18.1-201ENST00000363807 70 ntBASIC-1.61□□□□□ -2.67
CCDC87Q9NVE4 RNU6-912P-201ENST00000363800 104 ntBASIC-1.62□□□□□ -2.67
CCDC87Q9NVE4 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.63□□□□□ -2.67
CCDC87Q9NVE4 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.64□□□□□ -2.67
CCDC87Q9NVE4 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.64□□□□□ -2.67
CCDC87Q9NVE4 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.65□□□□□ -2.67
CCDC87Q9NVE4 SNORD113-3-201ENST00000364830 72 ntBASIC-1.67□□□□□ -2.68
CCDC87Q9NVE4 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.68□□□□□ -2.68
CCDC87Q9NVE4 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.69□□□□□ -2.68
CCDC87Q9NVE4 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.69□□□□□ -2.68
CCDC87Q9NVE4 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.69□□□□□ -2.68
CCDC87Q9NVE4 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.72□□□□□ -2.68
CCDC87Q9NVE4 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.72□□□□□ -2.68
CCDC87Q9NVE4 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.72□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 8.6 ms