Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU6-576P-201ENST00000390854 102 ntBASIC-0.74□□□□□ -2.53
LIG3P49916 RNY1P9-201ENST00000532431 109 ntBASIC-0.74□□□□□ -2.53
LIG3P49916 SNORD83B-201ENST00000386745 93 ntBASIC-0.75□□□□□ -2.53
LIG3P49916 MIR409-201ENST00000362237 79 ntBASIC-0.76□□□□□ -2.53
LIG3P49916 RNU6-68P-201ENST00000516576 104 ntBASIC-0.76□□□□□ -2.53
LIG3P49916 RNU6-695P-201ENST00000391157 104 ntBASIC-0.77□□□□□ -2.53
LIG3P49916 MIR3681-201ENST00000580089 72 ntBASIC-0.77□□□□□ -2.53
LIG3P49916 Y_RNA.320-201ENST00000365144 102 ntBASIC-0.78□□□□□ -2.53
LIG3P49916 Y_RNA.781-201ENST00000620301 103 ntBASIC-0.8□□□□□ -2.54
LIG3P49916 MIR4317-201ENST00000637586 65 ntBASIC-0.8□□□□□ -2.54
LIG3P49916 RNU6-822P-201ENST00000362707 106 ntBASIC-0.81□□□□□ -2.54
LIG3P49916 RNU6-1326P-201ENST00000391262 107 ntBASIC-0.81□□□□□ -2.54
LIG3P49916 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.81□□□□□ -2.54
LIG3P49916 Y_RNA.345-201ENST00000365384 92 ntBASIC-0.83□□□□□ -2.54
LIG3P49916 RNA5SP331-201ENST00000364986 107 ntBASIC-0.84□□□□□ -2.54
LIG3P49916 RNU6-59P-201ENST00000384787 107 ntBASIC-0.84□□□□□ -2.54
LIG3P49916 SNORD18C-201ENST00000362704 69 ntBASIC-0.85□□□□□ -2.55
LIG3P49916 MIR548AJ2-201ENST00000408539 92 ntBASIC-0.85□□□□□ -2.55
LIG3P49916 RNA5SP266-201ENST00000410273 108 ntBASIC-0.85□□□□□ -2.55
LIG3P49916 MIR378F-201ENST00000578143 78 ntBASIC-0.86□□□□□ -2.55
LIG3P49916 RNU6-912P-201ENST00000363800 104 ntBASIC-0.87□□□□□ -2.55
LIG3P49916 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.87□□□□□ -2.55
LIG3P49916 RNU6-176P-201ENST00000517196 105 ntBASIC-0.87□□□□□ -2.55
LIG3P49916 Y_RNA.382-201ENST00000365672 114 ntBASIC-0.88□□□□□ -2.55
LIG3P49916 RNU6-400P-201ENST00000391173 106 ntBASIC-0.89□□□□□ -2.55
LIG3P49916 Y_RNA.206-201ENST00000364136 102 ntBASIC-0.91□□□□□ -2.56
LIG3P49916 Y_RNA.449-201ENST00000384187 102 ntBASIC-0.91□□□□□ -2.56
LIG3P49916 MIR6502-201ENST00000617296 76 ntBASIC-0.91□□□□□ -2.56
LIG3P49916 MIR4520-1-201ENST00000582609 70 ntBASIC-0.92□□□□□ -2.56
LIG3P49916 MIR3123-201ENST00000583417 75 ntBASIC-0.92□□□□□ -2.56
LIG3P49916 SNORD19B.1-201ENST00000630615 80 ntBASIC-0.92□□□□□ -2.56
LIG3P49916 RNU6-1034P-201ENST00000365335 101 ntBASIC-0.94□□□□□ -2.56
LIG3P49916 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.94□□□□□ -2.56
LIG3P49916 Y_RNA.129-201ENST00000363392 110 ntBASIC-0.95□□□□□ -2.56
LIG3P49916 RNU6-1169P-201ENST00000363537 103 ntBASIC-0.95□□□□□ -2.56
LIG3P49916 RNU6-1324P-201ENST00000384222 107 ntBASIC-0.95□□□□□ -2.56
LIG3P49916 SNORD115.2-201ENST00000391126 59 ntBASIC-0.95□□□□□ -2.56
LIG3P49916 snoU13.10-201ENST00000459301 103 ntBASIC-0.95□□□□□ -2.56
LIG3P49916 MIR548H1-201ENST00000408610 102 ntBASIC-0.96□□□□□ -2.56
LIG3P49916 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-0.96□□□□□ -2.56
LIG3P49916 Y_RNA.134-201ENST00000363435 105 ntBASIC-0.97□□□□□ -2.56
LIG3P49916 SCARNA17-201ENST00000516183 144 ntBASIC-0.97□□□□□ -2.56
LIG3P49916 MIR548W-201ENST00000581970 74 ntBASIC-0.97□□□□□ -2.56
LIG3P49916 MIR379-201ENST00000362218 67 ntBASIC-0.98□□□□□ -2.57
LIG3P49916 MIR487B-201ENST00000385021 84 ntBASIC-0.98□□□□□ -2.57
LIG3P49916 Y_RNA.678-201ENST00000516408 96 ntBASIC-0.98□□□□□ -2.57
LIG3P49916 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-0.98□□□□□ -2.57
LIG3P49916 Y_RNA.103-201ENST00000363171 102 ntBASIC-0.99□□□□□ -2.57
LIG3P49916 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.99□□□□□ -2.57
LIG3P49916 MIR1254-1-201ENST00000408257 97 ntBASIC-0.99□□□□□ -2.57
LIG3P49916 Y_RNA.175-201ENST00000363794 111 ntBASIC-1□□□□□ -2.57
LIG3P49916 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.02□□□□□ -2.57
LIG3P49916 MIR4306-201ENST00000583390 91 ntBASIC-1.02□□□□□ -2.57
LIG3P49916 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.03□□□□□ -2.57
LIG3P49916 MIR587-201ENST00000384845 96 ntBASIC-1.03□□□□□ -2.57
LIG3P49916 SNX3P1X-201ENST00000414887 175 ntBASIC-1.03□□□□□ -2.57
LIG3P49916 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.03□□□□□ -2.57
LIG3P49916 FTX_4.1-201ENST00000616291 147 ntBASIC-1.04□□□□□ -2.58
LIG3P49916 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.05□□□□□ -2.58
LIG3P49916 SNORD113-3-201ENST00000364830 72 ntBASIC-1.06□□□□□ -2.58
LIG3P49916 RNU6-724P-201ENST00000390958 105 ntBASIC-1.06□□□□□ -2.58
LIG3P49916 U6.103-201ENST00000637085 61 ntBASIC-1.07□□□□□ -2.58
LIG3P49916 MIR548AM-201ENST00000584298 74 ntBASIC-1.08□□□□□ -2.58
LIG3P49916 MIR6738-201ENST00000619620 64 ntBASIC-1.08□□□□□ -2.58
LIG3P49916 RNA5SP224-201ENST00000365069 126 ntBASIC-1.09□□□□□ -2.58
LIG3P49916 RNA5SP86-201ENST00000390869 98 ntBASIC-1.09□□□□□ -2.58
LIG3P49916 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.1□□□□□ -2.59
LIG3P49916 RNU6-841P-201ENST00000383872 107 ntBASIC-1.1□□□□□ -2.59
LIG3P49916 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.11□□□□□ -2.59
LIG3P49916 RNU6-10P-201ENST00000384036 107 ntBASIC-1.11□□□□□ -2.59
LIG3P49916 RNU6-836P-201ENST00000362920 107 ntBASIC-1.12□□□□□ -2.59
LIG3P49916 MIR5591-201ENST00000578248 65 ntBASIC-1.12□□□□□ -2.59
LIG3P49916 MIR4324-201ENST00000584846 72 ntBASIC-1.12□□□□□ -2.59
LIG3P49916 RNU6-706P-201ENST00000517229 104 ntBASIC-1.13□□□□□ -2.59
LIG3P49916 AC138207.3-201ENST00000585289 166 ntBASIC-1.14□□□□□ -2.59
LIG3P49916 MIR4320-201ENST00000636981 65 ntBASIC-1.14□□□□□ -2.59
LIG3P49916 SNORD45C-201ENST00000383893 79 ntBASIC-1.15□□□□□ -2.59
LIG3P49916 SNORD111B-201ENST00000408587 80 ntBASIC-1.15□□□□□ -2.59
LIG3P49916 RNU6-226P-201ENST00000363778 107 ntBASIC-1.16□□□□□ -2.6
LIG3P49916 HLA-S-202ENST00000425174 53 ntBASIC-1.16□□□□□ -2.6
LIG3P49916 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.19□□□□□ -2.6
LIG3P49916 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.2□□□□□ -2.6
LIG3P49916 RNU6-345P-201ENST00000517001 107 ntBASIC-1.2□□□□□ -2.6
LIG3P49916 MIR601-201ENST00000385256 79 ntBASIC-1.21□□□□□ -2.6
LIG3P49916 AC097484.2-201ENST00000509147 251 ntBASIC-1.21□□□□□ -2.6
LIG3P49916 MIR4770-201ENST00000579149 58 ntBASIC-1.22□□□□□ -2.6
LIG3P49916 MIR198-201ENST00000637333 62 ntBASIC-1.22□□□□□ -2.6
LIG3P49916 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.23□□□□□ -2.61
LIG3P49916 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.23□□□□□ -2.61
LIG3P49916 MIR3115-201ENST00000577915 68 ntBASIC-1.23□□□□□ -2.61
LIG3P49916 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.23□□□□□ -2.61
LIG3P49916 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.23□□□□□ -2.61
LIG3P49916 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.23□□□□□ -2.61
LIG3P49916 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.23□□□□□ -2.61
LIG3P49916 AC108019.1-201ENST00000512540 175 ntBASIC-1.25□□□□□ -2.61
LIG3P49916 MIR4756-201ENST00000577874 78 ntBASIC-1.25□□□□□ -2.61
LIG3P49916 MIR656-201ENST00000385224 78 ntBASIC-1.26□□□□□ -2.61
LIG3P49916 MIR3165-201ENST00000579874 75 ntBASIC-1.26□□□□□ -2.61
LIG3P49916 MIR4723-201ENST00000585070 81 ntBASIC-1.26□□□□□ -2.61
LIG3P49916 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.28□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 168.2 ms