Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 snoU83B.1-201ENST00000517136 88 ntBASIC-0.53□□□□□ -2.49
LIMS1P48059 U6.103-201ENST00000637085 61 ntBASIC-0.53□□□□□ -2.49
LIMS1P48059 RNU6-79P-201ENST00000362511 107 ntBASIC-0.54□□□□□ -2.5
LIMS1P48059 SNORD18C-201ENST00000362704 69 ntBASIC-0.54□□□□□ -2.5
LIMS1P48059 SNORD114-25-201ENST00000363742 72 ntBASIC-0.54□□□□□ -2.5
LIMS1P48059 U6.97-201ENST00000636904 101 ntBASIC-0.54□□□□□ -2.5
LIMS1P48059 Y_RNA.206-201ENST00000364136 102 ntBASIC-0.56□□□□□ -2.5
LIMS1P48059 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.56□□□□□ -2.5
LIMS1P48059 MT-TQ-201ENST00000387372 72 ntBASIC-0.56□□□□□ -2.5
LIMS1P48059 RNU6-724P-201ENST00000390958 105 ntBASIC-0.56□□□□□ -2.5
LIMS1P48059 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.56□□□□□ -2.5
LIMS1P48059 RNU7-134P-201ENST00000458997 64 ntBASIC-0.59□□□□□ -2.5
LIMS1P48059 MIR379-201ENST00000362218 67 ntBASIC-0.6□□□□□ -2.51
LIMS1P48059 AL500527.2-201ENST00000454105 95 ntBASIC-0.6□□□□□ -2.51
LIMS1P48059 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.6□□□□□ -2.51
LIMS1P48059 MIR4723-201ENST00000585070 81 ntBASIC-0.61□□□□□ -2.51
LIMS1P48059 Y_RNA.320-201ENST00000365144 102 ntBASIC-0.62□□□□□ -2.51
LIMS1P48059 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.62□□□□□ -2.51
LIMS1P48059 RNU6-695P-201ENST00000391157 104 ntBASIC-0.63□□□□□ -2.51
LIMS1P48059 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.63□□□□□ -2.51
LIMS1P48059 Y_RNA.382-201ENST00000365672 114 ntBASIC-0.64□□□□□ -2.51
LIMS1P48059 RNU6-576P-201ENST00000390854 102 ntBASIC-0.65□□□□□ -2.51
LIMS1P48059 MIR196A1-201ENST00000388006 70 ntBASIC-0.66□□□□□ -2.52
LIMS1P48059 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.67□□□□□ -2.52
LIMS1P48059 MIR548AJ2-201ENST00000408539 92 ntBASIC-0.67□□□□□ -2.52
LIMS1P48059 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-0.67□□□□□ -2.52
LIMS1P48059 MIR587-201ENST00000384845 96 ntBASIC-0.68□□□□□ -2.52
LIMS1P48059 AC091912.2-201ENST00000624798 167 ntBASIC-0.68□□□□□ -2.52
LIMS1P48059 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.7□□□□□ -2.52
LIMS1P48059 RNU6-400P-201ENST00000391173 106 ntBASIC-0.7□□□□□ -2.52
LIMS1P48059 MIR6874-201ENST00000635894 71 ntBASIC-0.7□□□□□ -2.52
LIMS1P48059 MIR601-201ENST00000385256 79 ntBASIC-0.71□□□□□ -2.52
LIMS1P48059 MIR4320-201ENST00000636981 65 ntBASIC-0.72□□□□□ -2.52
LIMS1P48059 RNU6-10P-201ENST00000384036 107 ntBASIC-0.73□□□□□ -2.53
LIMS1P48059 SCARNA17-201ENST00000516183 144 ntBASIC-0.73□□□□□ -2.53
LIMS1P48059 Y_RNA.134-201ENST00000363435 105 ntBASIC-0.74□□□□□ -2.53
LIMS1P48059 MIR6738-201ENST00000619620 64 ntBASIC-0.74□□□□□ -2.53
LIMS1P48059 SNORD19B.1-201ENST00000630615 80 ntBASIC-0.75□□□□□ -2.53
LIMS1P48059 SNORD83B-201ENST00000386745 93 ntBASIC-0.76□□□□□ -2.53
LIMS1P48059 MIR4324-201ENST00000584846 72 ntBASIC-0.76□□□□□ -2.53
LIMS1P48059 MIR4499-201ENST00000584834 69 ntBASIC-0.77□□□□□ -2.53
LIMS1P48059 RNU6-912P-201ENST00000363800 104 ntBASIC-0.78□□□□□ -2.53
LIMS1P48059 RNU6-1034P-201ENST00000365335 101 ntBASIC-0.78□□□□□ -2.53
LIMS1P48059 U4.2-201ENST00000618561 85 ntBASIC-0.78□□□□□ -2.53
LIMS1P48059 uc_338.19-201ENST00000616808 99 ntBASIC-0.79□□□□□ -2.54
LIMS1P48059 RNA5SP224-201ENST00000365069 126 ntBASIC-0.8□□□□□ -2.54
LIMS1P48059 SNORD115.2-201ENST00000391126 59 ntBASIC-0.81□□□□□ -2.54
LIMS1P48059 AC138207.3-201ENST00000585289 166 ntBASIC-0.81□□□□□ -2.54
LIMS1P48059 SNORD111B-201ENST00000408587 80 ntBASIC-0.82□□□□□ -2.54
LIMS1P48059 MIR378F-201ENST00000578143 78 ntBASIC-0.82□□□□□ -2.54
LIMS1P48059 MIR198-201ENST00000637333 62 ntBASIC-0.82□□□□□ -2.54
LIMS1P48059 RNU6-836P-201ENST00000362920 107 ntBASIC-0.83□□□□□ -2.54
LIMS1P48059 Y_RNA.449-201ENST00000384187 102 ntBASIC-0.83□□□□□ -2.54
LIMS1P48059 Y_RNA.260-201ENST00000364628 101 ntBASIC-0.84□□□□□ -2.54
LIMS1P48059 FTX_4.1-201ENST00000616291 147 ntBASIC-0.84□□□□□ -2.54
LIMS1P48059 RNA5SP461-201ENST00000516451 104 ntBASIC-0.85□□□□□ -2.55
LIMS1P48059 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-0.85□□□□□ -2.55
LIMS1P48059 RNU6-1169P-201ENST00000363537 103 ntBASIC-0.86□□□□□ -2.55
LIMS1P48059 MIR3123-201ENST00000583417 75 ntBASIC-0.86□□□□□ -2.55
LIMS1P48059 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.87□□□□□ -2.55
LIMS1P48059 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.87□□□□□ -2.55
LIMS1P48059 MIR548H1-201ENST00000408610 102 ntBASIC-0.87□□□□□ -2.55
LIMS1P48059 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.87□□□□□ -2.55
LIMS1P48059 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.87□□□□□ -2.55
LIMS1P48059 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.87□□□□□ -2.55
LIMS1P48059 RNU6-485P-201ENST00000363475 107 ntBASIC-0.88□□□□□ -2.55
LIMS1P48059 Y_RNA.349-201ENST00000365406 102 ntBASIC-0.88□□□□□ -2.55
LIMS1P48059 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-0.88□□□□□ -2.55
LIMS1P48059 MIR6502-201ENST00000617296 76 ntBASIC-0.88□□□□□ -2.55
LIMS1P48059 MIR1207-201ENST00000408249 87 ntBASIC-0.89□□□□□ -2.55
LIMS1P48059 Y_RNA.175-201ENST00000363794 111 ntBASIC-0.9□□□□□ -2.55
LIMS1P48059 RNU6-1324P-201ENST00000384222 107 ntBASIC-0.9□□□□□ -2.55
LIMS1P48059 MIR8485-201ENST00000401372 91 ntBASIC-0.92□□□□□ -2.56
LIMS1P48059 RNU6-133P-201ENST00000383989 107 ntBASIC-0.93□□□□□ -2.56
LIMS1P48059 SNORD114-3-201ENST00000364969 75 ntBASIC-0.94□□□□□ -2.56
LIMS1P48059 RNU6-345P-201ENST00000517001 107 ntBASIC-0.94□□□□□ -2.56
LIMS1P48059 MIR548W-201ENST00000581970 74 ntBASIC-0.94□□□□□ -2.56
LIMS1P48059 MIR4306-201ENST00000583390 91 ntBASIC-0.94□□□□□ -2.56
LIMS1P48059 SNORD45C-201ENST00000383893 79 ntBASIC-0.95□□□□□ -2.56
LIMS1P48059 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.96□□□□□ -2.56
LIMS1P48059 RNU6-841P-201ENST00000383872 107 ntBASIC-0.96□□□□□ -2.56
LIMS1P48059 snoU13.10-201ENST00000459301 103 ntBASIC-0.96□□□□□ -2.56
LIMS1P48059 MIR3115-201ENST00000577915 68 ntBASIC-0.96□□□□□ -2.56
LIMS1P48059 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-0.97□□□□□ -2.56
LIMS1P48059 MIR365A-201ENST00000362260 87 ntBASIC-0.98□□□□□ -2.57
LIMS1P48059 Y_RNA.335-201ENST00000365299 96 ntBASIC-0.98□□□□□ -2.57
LIMS1P48059 Y_RNA.434-201ENST00000384090 100 ntBASIC-1□□□□□ -2.57
LIMS1P48059 MIR656-201ENST00000385224 78 ntBASIC-1□□□□□ -2.57
LIMS1P48059 MIR1254-1-201ENST00000408257 97 ntBASIC-1□□□□□ -2.57
LIMS1P48059 MIR1285-2-201ENST00000408311 88 ntBASIC-1□□□□□ -2.57
LIMS1P48059 SNORD113-3-201ENST00000364830 72 ntBASIC-1.02□□□□□ -2.57
LIMS1P48059 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.03□□□□□ -2.57
LIMS1P48059 MIR3165-201ENST00000579874 75 ntBASIC-1.03□□□□□ -2.57
LIMS1P48059 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.04□□□□□ -2.58
LIMS1P48059 MIR4441-201ENST00000582623 100 ntBASIC-1.05□□□□□ -2.58
LIMS1P48059 MIR548AM-201ENST00000584298 74 ntBASIC-1.05□□□□□ -2.58
LIMS1P48059 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.06□□□□□ -2.58
LIMS1P48059 RNA5SP180-201ENST00000516181 101 ntBASIC-1.07□□□□□ -2.58
LIMS1P48059 RNU6-894P-201ENST00000517094 105 ntBASIC-1.07□□□□□ -2.58
LIMS1P48059 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.07□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 8.5 ms