Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MIR4436A-201ENST00000585278 85 ntBASIC-0.4□□□□□ -2.47
MSX1P28360 MIR548AZ-201ENST00000616567 95 ntBASIC-0.4□□□□□ -2.47
MSX1P28360 MIR6818-201ENST00000621576 65 ntBASIC-0.4□□□□□ -2.47
MSX1P28360 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.41□□□□□ -2.48
MSX1P28360 RNU6-68P-201ENST00000516576 104 ntBASIC-0.41□□□□□ -2.48
MSX1P28360 MIR379-201ENST00000362218 67 ntBASIC-0.43□□□□□ -2.48
MSX1P28360 Y_RNA.382-201ENST00000365672 114 ntBASIC-0.43□□□□□ -2.48
MSX1P28360 MT-TQ-201ENST00000387372 72 ntBASIC-0.43□□□□□ -2.48
MSX1P28360 AC138207.3-201ENST00000585289 166 ntBASIC-0.43□□□□□ -2.48
MSX1P28360 Y_RNA.320-201ENST00000365144 102 ntBASIC-0.44□□□□□ -2.48
MSX1P28360 U4.2-201ENST00000618561 85 ntBASIC-0.44□□□□□ -2.48
MSX1P28360 MIR4320-201ENST00000636981 65 ntBASIC-0.45□□□□□ -2.48
MSX1P28360 MIR601-201ENST00000385256 79 ntBASIC-0.46□□□□□ -2.48
MSX1P28360 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.46□□□□□ -2.48
MSX1P28360 MIR3681-201ENST00000580089 72 ntBASIC-0.46□□□□□ -2.48
MSX1P28360 MIR382-201ENST00000637119 76 ntBASIC-0.46□□□□□ -2.48
MSX1P28360 RNU6-164P-201ENST00000364604 103 ntBASIC-0.47□□□□□ -2.48
MSX1P28360 snoU83B.1-201ENST00000517136 88 ntBASIC-0.47□□□□□ -2.48
MSX1P28360 MIR587-201ENST00000384845 96 ntBASIC-0.48□□□□□ -2.49
MSX1P28360 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.48□□□□□ -2.49
MSX1P28360 MIR198-201ENST00000637333 62 ntBASIC-0.48□□□□□ -2.49
MSX1P28360 RNU6-695P-201ENST00000391157 104 ntBASIC-0.49□□□□□ -2.49
MSX1P28360 RNU6-79P-201ENST00000362511 107 ntBASIC-0.5□□□□□ -2.49
MSX1P28360 Y_RNA.134-201ENST00000363435 105 ntBASIC-0.52□□□□□ -2.49
MSX1P28360 SNORD114-25-201ENST00000363742 72 ntBASIC-0.52□□□□□ -2.49
MSX1P28360 SNORD115.2-201ENST00000391126 59 ntBASIC-0.52□□□□□ -2.49
MSX1P28360 SNORD111B-201ENST00000408587 80 ntBASIC-0.52□□□□□ -2.49
MSX1P28360 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.52□□□□□ -2.49
MSX1P28360 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.53□□□□□ -2.49
MSX1P28360 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.53□□□□□ -2.49
MSX1P28360 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.53□□□□□ -2.49
MSX1P28360 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.53□□□□□ -2.49
MSX1P28360 MIR548AJ2-201ENST00000408539 92 ntBASIC-0.55□□□□□ -2.5
MSX1P28360 RNU6-485P-201ENST00000363475 107 ntBASIC-0.59□□□□□ -2.5
MSX1P28360 RNU6-133P-201ENST00000383989 107 ntBASIC-0.6□□□□□ -2.51
MSX1P28360 MIR1207-201ENST00000408249 87 ntBASIC-0.6□□□□□ -2.51
MSX1P28360 RNU6-10P-201ENST00000384036 107 ntBASIC-0.61□□□□□ -2.51
MSX1P28360 RNU6-576P-201ENST00000390854 102 ntBASIC-0.62□□□□□ -2.51
MSX1P28360 RNU7-134P-201ENST00000458997 64 ntBASIC-0.62□□□□□ -2.51
MSX1P28360 MIR6738-201ENST00000619620 64 ntBASIC-0.62□□□□□ -2.51
MSX1P28360 RNU6-836P-201ENST00000362920 107 ntBASIC-0.63□□□□□ -2.51
MSX1P28360 SCARNA17-201ENST00000516183 144 ntBASIC-0.63□□□□□ -2.51
MSX1P28360 RNU6-912P-201ENST00000363800 104 ntBASIC-0.64□□□□□ -2.51
MSX1P28360 AL500527.2-201ENST00000454105 95 ntBASIC-0.67□□□□□ -2.52
MSX1P28360 MIR4324-201ENST00000584846 72 ntBASIC-0.67□□□□□ -2.52
MSX1P28360 AC091912.2-201ENST00000624798 167 ntBASIC-0.68□□□□□ -2.52
MSX1P28360 SNORD19B.1-201ENST00000630615 80 ntBASIC-0.68□□□□□ -2.52
MSX1P28360 SNORD114-3-201ENST00000364969 75 ntBASIC-0.69□□□□□ -2.52
MSX1P28360 RNA5SP224-201ENST00000365069 126 ntBASIC-0.69□□□□□ -2.52
MSX1P28360 MIR6874-201ENST00000635894 71 ntBASIC-0.69□□□□□ -2.52
MSX1P28360 Y_RNA.260-201ENST00000364628 101 ntBASIC-0.7□□□□□ -2.52
MSX1P28360 RNU6-400P-201ENST00000391173 106 ntBASIC-0.7□□□□□ -2.52
MSX1P28360 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.7□□□□□ -2.52
MSX1P28360 RNU6-894P-201ENST00000517094 105 ntBASIC-0.7□□□□□ -2.52
MSX1P28360 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.72□□□□□ -2.52
MSX1P28360 MIR378F-201ENST00000578143 78 ntBASIC-0.72□□□□□ -2.52
MSX1P28360 FTX_4.1-201ENST00000616291 147 ntBASIC-0.72□□□□□ -2.52
MSX1P28360 RNU6-1034P-201ENST00000365335 101 ntBASIC-0.73□□□□□ -2.53
MSX1P28360 RNU6-1169P-201ENST00000363537 103 ntBASIC-0.74□□□□□ -2.53
MSX1P28360 RNA5SP461-201ENST00000516451 104 ntBASIC-0.75□□□□□ -2.53
MSX1P28360 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-0.76□□□□□ -2.53
MSX1P28360 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.77□□□□□ -2.53
MSX1P28360 MIR365A-201ENST00000362260 87 ntBASIC-0.78□□□□□ -2.53
MSX1P28360 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.78□□□□□ -2.53
MSX1P28360 RNA5SP180-201ENST00000516181 101 ntBASIC-0.79□□□□□ -2.54
MSX1P28360 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-0.8□□□□□ -2.54
MSX1P28360 Y_RNA.335-201ENST00000365299 96 ntBASIC-0.81□□□□□ -2.54
MSX1P28360 RNU6-1324P-201ENST00000384222 107 ntBASIC-0.81□□□□□ -2.54
MSX1P28360 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.81□□□□□ -2.54
MSX1P28360 MIR3115-201ENST00000577915 68 ntBASIC-0.81□□□□□ -2.54
MSX1P28360 SNORD45C-201ENST00000383893 79 ntBASIC-0.82□□□□□ -2.54
MSX1P28360 MIR4441-201ENST00000582623 100 ntBASIC-0.82□□□□□ -2.54
MSX1P28360 RNY4P27-201ENST00000363341 96 ntBASIC-0.83□□□□□ -2.54
MSX1P28360 MIR548H1-201ENST00000408610 102 ntBASIC-0.83□□□□□ -2.54
MSX1P28360 Y_RNA.449-201ENST00000384187 102 ntBASIC-0.85□□□□□ -2.55
MSX1P28360 Y_RNA.519-201ENST00000384553 102 ntBASIC-0.85□□□□□ -2.55
MSX1P28360 RNU6-345P-201ENST00000517001 107 ntBASIC-0.85□□□□□ -2.55
MSX1P28360 MIR4499-201ENST00000584834 69 ntBASIC-0.85□□□□□ -2.55
MSX1P28360 uc_338.19-201ENST00000616808 99 ntBASIC-0.85□□□□□ -2.55
MSX1P28360 MIR196A1-201ENST00000388006 70 ntBASIC-0.87□□□□□ -2.55
MSX1P28360 Y_RNA.684-201ENST00000516510 99 ntBASIC-0.87□□□□□ -2.55
MSX1P28360 Y_RNA.349-201ENST00000365406 102 ntBASIC-0.88□□□□□ -2.55
MSX1P28360 MIR1285-2-201ENST00000408311 88 ntBASIC-0.88□□□□□ -2.55
MSX1P28360 MIR3123-201ENST00000583417 75 ntBASIC-0.88□□□□□ -2.55
MSX1P28360 MIR1254-1-201ENST00000408257 97 ntBASIC-0.9□□□□□ -2.55
MSX1P28360 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.9□□□□□ -2.55
MSX1P28360 MIR656-201ENST00000385224 78 ntBASIC-0.91□□□□□ -2.56
MSX1P28360 Y_RNA.434-201ENST00000384090 100 ntBASIC-0.93□□□□□ -2.56
MSX1P28360 SNORD83B-201ENST00000386745 93 ntBASIC-0.93□□□□□ -2.56
MSX1P28360 MIR3165-201ENST00000579874 75 ntBASIC-0.93□□□□□ -2.56
MSX1P28360 RNU6-1091P-201ENST00000363945 107 ntBASIC-0.95□□□□□ -2.56
MSX1P28360 snoU13.10-201ENST00000459301 103 ntBASIC-0.95□□□□□ -2.56
MSX1P28360 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.96□□□□□ -2.56
MSX1P28360 Y_RNA.175-201ENST00000363794 111 ntBASIC-0.97□□□□□ -2.56
MSX1P28360 MIR8485-201ENST00000401372 91 ntBASIC-0.97□□□□□ -2.56
MSX1P28360 MIR548W-201ENST00000581970 74 ntBASIC-0.97□□□□□ -2.56
MSX1P28360 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-0.97□□□□□ -2.56
MSX1P28360 Y_RNA.406-201ENST00000383984 100 ntBASIC-0.98□□□□□ -2.57
MSX1P28360 MIR6502-201ENST00000617296 76 ntBASIC-0.99□□□□□ -2.57
MSX1P28360 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.02□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 194.9 ms