Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 MIR548AA1-201ENST00000384971 97 ntBASIC-1.59□□□□□ -2.66
VPS54Q9P1Q0 MIR450A2-201ENST00000385022 100 ntBASIC-1.59□□□□□ -2.66
VPS54Q9P1Q0 MIR579-201ENST00000385221 98 ntBASIC-1.59□□□□□ -2.66
VPS54Q9P1Q0 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.59□□□□□ -2.66
VPS54Q9P1Q0 RNA5SP173-201ENST00000364857 136 ntBASIC-1.6□□□□□ -2.67
VPS54Q9P1Q0 RNU6-687P-201ENST00000516443 89 ntBASIC-1.6□□□□□ -2.67
VPS54Q9P1Q0 MIR4666B-201ENST00000578142 81 ntBASIC-1.6□□□□□ -2.67
VPS54Q9P1Q0 SNORD114-3-201ENST00000364969 75 ntBASIC-1.61□□□□□ -2.67
VPS54Q9P1Q0 RNA5SP331-201ENST00000364986 107 ntBASIC-1.61□□□□□ -2.67
VPS54Q9P1Q0 RNU6-118P-201ENST00000516552 102 ntBASIC-1.61□□□□□ -2.67
VPS54Q9P1Q0 RNU7-151P-201ENST00000516930 53 ntBASIC-1.61□□□□□ -2.67
VPS54Q9P1Q0 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.61□□□□□ -2.67
VPS54Q9P1Q0 MIR5582-201ENST00000579697 68 ntBASIC-1.61□□□□□ -2.67
VPS54Q9P1Q0 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.62□□□□□ -2.67
VPS54Q9P1Q0 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.62□□□□□ -2.67
VPS54Q9P1Q0 RNU6-400P-201ENST00000391173 106 ntBASIC-1.63□□□□□ -2.67
VPS54Q9P1Q0 RNU6-172P-201ENST00000411000 93 ntBASIC-1.63□□□□□ -2.67
VPS54Q9P1Q0 RNU6-980P-201ENST00000516925 103 ntBASIC-1.63□□□□□ -2.67
VPS54Q9P1Q0 RNU6-79P-201ENST00000362511 107 ntBASIC-1.64□□□□□ -2.67
VPS54Q9P1Q0 RNU6-247P-201ENST00000362636 107 ntBASIC-1.64□□□□□ -2.67
VPS54Q9P1Q0 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.64□□□□□ -2.67
VPS54Q9P1Q0 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.64□□□□□ -2.67
VPS54Q9P1Q0 AC062037.1-201ENST00000605302 128 ntBASIC-1.64□□□□□ -2.67
VPS54Q9P1Q0 RNU6-563P-201ENST00000364872 108 ntBASIC-1.65□□□□□ -2.67
VPS54Q9P1Q0 MIR496-201ENST00000385226 102 ntBASIC-1.65□□□□□ -2.67
VPS54Q9P1Q0 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.65□□□□□ -2.67
VPS54Q9P1Q0 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.65□□□□□ -2.67
VPS54Q9P1Q0 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.66□□□□□ -2.68
VPS54Q9P1Q0 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.66□□□□□ -2.68
VPS54Q9P1Q0 RNA5SP405-201ENST00000363059 114 ntBASIC-1.67□□□□□ -2.68
VPS54Q9P1Q0 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.67□□□□□ -2.68
VPS54Q9P1Q0 AC120024.2-201ENST00000576526 175 ntBASIC-1.67□□□□□ -2.68
VPS54Q9P1Q0 MIR3139-201ENST00000579145 76 ntBASIC-1.67□□□□□ -2.68
VPS54Q9P1Q0 MIR7978-201ENST00000636158 59 ntBASIC-1.67□□□□□ -2.68
VPS54Q9P1Q0 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.68□□□□□ -2.68
VPS54Q9P1Q0 RNU6-995P-201ENST00000391244 107 ntBASIC-1.68□□□□□ -2.68
VPS54Q9P1Q0 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.68□□□□□ -2.68
VPS54Q9P1Q0 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.68□□□□□ -2.68
VPS54Q9P1Q0 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.69□□□□□ -2.68
VPS54Q9P1Q0 SNORD63.2-201ENST00000516303 64 ntBASIC-1.69□□□□□ -2.68
VPS54Q9P1Q0 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.69□□□□□ -2.68
VPS54Q9P1Q0 RNU6-669P-201ENST00000365575 107 ntBASIC-1.7□□□□□ -2.68
VPS54Q9P1Q0 RNU6-542P-201ENST00000516405 103 ntBASIC-1.7□□□□□ -2.68
VPS54Q9P1Q0 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.71□□□□□ -2.68
VPS54Q9P1Q0 RNU6-974P-201ENST00000384099 108 ntBASIC-1.71□□□□□ -2.68
VPS54Q9P1Q0 RNU6-411P-201ENST00000384451 107 ntBASIC-1.71□□□□□ -2.68
VPS54Q9P1Q0 RNU6-92P-201ENST00000605893 104 ntBASIC-1.71□□□□□ -2.68
VPS54Q9P1Q0 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.72□□□□□ -2.68
VPS54Q9P1Q0 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-1.72□□□□□ -2.68
VPS54Q9P1Q0 RNU6-820P-201ENST00000384273 107 ntBASIC-1.73□□□□□ -2.69
VPS54Q9P1Q0 RNU6-695P-201ENST00000391157 104 ntBASIC-1.73□□□□□ -2.69
VPS54Q9P1Q0 SNORD60.1-201ENST00000362451 73 ntBASIC-1.74□□□□□ -2.69
VPS54Q9P1Q0 RNU6-119P-201ENST00000364882 107 ntBASIC-1.74□□□□□ -2.69
VPS54Q9P1Q0 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.74□□□□□ -2.69
VPS54Q9P1Q0 MIR23C-201ENST00000579846 100 ntBASIC-1.74□□□□□ -2.69
VPS54Q9P1Q0 MIR548AM-201ENST00000584298 74 ntBASIC-1.74□□□□□ -2.69
VPS54Q9P1Q0 U7.4-201ENST00000614961 63 ntBASIC-1.74□□□□□ -2.69
VPS54Q9P1Q0 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.75□□□□□ -2.69
VPS54Q9P1Q0 RNU6-841P-201ENST00000383872 107 ntBASIC-1.75□□□□□ -2.69
VPS54Q9P1Q0 MT-TM-201ENST00000387377 68 ntBASIC-1.75□□□□□ -2.69
VPS54Q9P1Q0 RNU4-88P-201ENST00000411220 86 ntBASIC-1.75□□□□□ -2.69
VPS54Q9P1Q0 MIR3123-201ENST00000583417 75 ntBASIC-1.75□□□□□ -2.69
VPS54Q9P1Q0 AC005520.4-201ENST00000604337 90 ntBASIC-1.75□□□□□ -2.69
VPS54Q9P1Q0 MIR125B1-201ENST00000385236 88 ntBASIC-1.76□□□□□ -2.69
VPS54Q9P1Q0 AC013734.1-201ENST00000619329 111 ntBASIC-1.76□□□□□ -2.69
VPS54Q9P1Q0 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.76□□□□□ -2.69
VPS54Q9P1Q0 RNU6-194P-201ENST00000363862 105 ntBASIC-1.77□□□□□ -2.69
VPS54Q9P1Q0 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.77□□□□□ -2.69
VPS54Q9P1Q0 MIR1207-201ENST00000408249 87 ntBASIC-1.77□□□□□ -2.69
VPS54Q9P1Q0 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.78□□□□□ -2.69
VPS54Q9P1Q0 RNY3P8-201ENST00000411366 126 ntBASIC-1.78□□□□□ -2.69
VPS54Q9P1Q0 RNU6-634P-201ENST00000459134 106 ntBASIC-1.78□□□□□ -2.69
VPS54Q9P1Q0 RNU6-523P-201ENST00000516304 54 ntBASIC-1.78□□□□□ -2.69
VPS54Q9P1Q0 AL627230.5-201ENST00000619807 58 ntBASIC-1.78□□□□□ -2.69
VPS54Q9P1Q0 SNORA27.2-201ENST00000363365 126 ntBASIC-1.79□□□□□ -2.7
VPS54Q9P1Q0 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.79□□□□□ -2.7
VPS54Q9P1Q0 RNU6-573P-201ENST00000383938 106 ntBASIC-1.79□□□□□ -2.7
VPS54Q9P1Q0 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.79□□□□□ -2.7
VPS54Q9P1Q0 RNU6-663P-201ENST00000391105 106 ntBASIC-1.79□□□□□ -2.7
VPS54Q9P1Q0 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.79□□□□□ -2.7
VPS54Q9P1Q0 SNORD73B-201ENST00000364394 72 ntBASIC-1.8□□□□□ -2.7
VPS54Q9P1Q0 RNU6-810P-201ENST00000364001 107 ntBASIC-1.81□□□□□ -2.7
VPS54Q9P1Q0 RNU6-231P-201ENST00000517122 103 ntBASIC-1.81□□□□□ -2.7
VPS54Q9P1Q0 U6.97-201ENST00000636904 101 ntBASIC-1.81□□□□□ -2.7
VPS54Q9P1Q0 RNU6-1298P-201ENST00000362456 101 ntBASIC-1.82□□□□□ -2.7
VPS54Q9P1Q0 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.82□□□□□ -2.7
VPS54Q9P1Q0 SNORD116.2-201ENST00000391251 93 ntBASIC-1.82□□□□□ -2.7
VPS54Q9P1Q0 MIR7110-201ENST00000612638 86 ntBASIC-1.82□□□□□ -2.7
VPS54Q9P1Q0 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.83□□□□□ -2.7
VPS54Q9P1Q0 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.83□□□□□ -2.7
VPS54Q9P1Q0 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.84□□□□□ -2.7
VPS54Q9P1Q0 SNORD54-201ENST00000459159 67 ntBASIC-1.84□□□□□ -2.7
VPS54Q9P1Q0 SNORD30.1-201ENST00000391309 70 ntBASIC-1.85□□□□□ -2.71
VPS54Q9P1Q0 MIR1255A-201ENST00000408338 113 ntBASIC-1.85□□□□□ -2.71
VPS54Q9P1Q0 RNA5SP170-201ENST00000517150 101 ntBASIC-1.85□□□□□ -2.71
VPS54Q9P1Q0 Y_RNA.388-201ENST00000383919 113 ntBASIC-1.86□□□□□ -2.71
VPS54Q9P1Q0 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.86□□□□□ -2.71
VPS54Q9P1Q0 RNA5SP93-201ENST00000362525 114 ntBASIC-1.87□□□□□ -2.71
VPS54Q9P1Q0 SNORA25.5-201ENST00000363782 126 ntBASIC-1.87□□□□□ -2.71
VPS54Q9P1Q0 RNY4P29-201ENST00000410801 97 ntBASIC-1.88□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 532.1 ms