Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MIR548H4-201ENST00000408689 111 ntBASIC-0.18□□□□□ -2.44
CLIP3Q96DZ5 SNORD114-31-201ENST00000363219 75 ntBASIC-0.19□□□□□ -2.44
CLIP3Q96DZ5 MIR214-201ENST00000385214 110 ntBASIC-0.19□□□□□ -2.44
CLIP3Q96DZ5 RNY3P8-201ENST00000411366 126 ntBASIC-0.2□□□□□ -2.44
CLIP3Q96DZ5 RPL35AP4-201ENST00000412007 102 ntBASIC-0.21□□□□□ -2.44
CLIP3Q96DZ5 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.21□□□□□ -2.44
CLIP3Q96DZ5 MIR6759-201ENST00000638110 65 ntBASIC-0.21□□□□□ -2.44
CLIP3Q96DZ5 RNU6-1204P-201ENST00000363948 107 ntBASIC-0.22□□□□□ -2.44
CLIP3Q96DZ5 RNU6-361P-201ENST00000364454 107 ntBASIC-0.22□□□□□ -2.44
CLIP3Q96DZ5 IGLVI-20-201ENST00000519296 130 ntBASIC-0.22□□□□□ -2.44
CLIP3Q96DZ5 MIR4645-201ENST00000583158 77 ntBASIC-0.23□□□□□ -2.45
CLIP3Q96DZ5 MIR196A2-201ENST00000385189 110 ntBASIC-0.24□□□□□ -2.45
CLIP3Q96DZ5 MIR507-201ENST00000385234 94 ntBASIC-0.24□□□□□ -2.45
CLIP3Q96DZ5 MIR4426-201ENST00000640330 63 ntBASIC-0.24□□□□□ -2.45
CLIP3Q96DZ5 RNA5SP26-201ENST00000362406 119 ntBASIC-0.25□□□□□ -2.45
CLIP3Q96DZ5 RNU6-320P-201ENST00000516511 106 ntBASIC-0.25□□□□□ -2.45
CLIP3Q96DZ5 MIR4436A-201ENST00000585278 85 ntBASIC-0.25□□□□□ -2.45
CLIP3Q96DZ5 MIR8064-201ENST00000612863 90 ntBASIC-0.25□□□□□ -2.45
CLIP3Q96DZ5 MIR202-201ENST00000362219 110 ntBASIC-0.26□□□□□ -2.45
CLIP3Q96DZ5 RNA5SP275-201ENST00000363936 118 ntBASIC-0.26□□□□□ -2.45
CLIP3Q96DZ5 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.26□□□□□ -2.45
CLIP3Q96DZ5 AC021146.6-201ENST00000514659 117 ntBASIC-0.26□□□□□ -2.45
CLIP3Q96DZ5 SNORD114-28-201ENST00000363610 72 ntBASIC-0.27□□□□□ -2.45
CLIP3Q96DZ5 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.27□□□□□ -2.45
CLIP3Q96DZ5 MIR147A-201ENST00000385079 72 ntBASIC-0.27□□□□□ -2.45
CLIP3Q96DZ5 AC090616.4-201ENST00000448026 115 ntBASIC-0.27□□□□□ -2.45
CLIP3Q96DZ5 RNU6-431P-201ENST00000383874 107 ntBASIC-0.28□□□□□ -2.45
CLIP3Q96DZ5 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.28□□□□□ -2.45
CLIP3Q96DZ5 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-0.28□□□□□ -2.45
CLIP3Q96DZ5 SNORD114-14-201ENST00000362723 75 ntBASIC-0.29□□□□□ -2.46
CLIP3Q96DZ5 SNORD14C-201ENST00000365382 88 ntBASIC-0.29□□□□□ -2.46
CLIP3Q96DZ5 RNU6-1008P-201ENST00000384160 104 ntBASIC-0.29□□□□□ -2.46
CLIP3Q96DZ5 SNORD126-201ENST00000459475 77 ntBASIC-0.29□□□□□ -2.46
CLIP3Q96DZ5 MIR5589-201ENST00000579442 60 ntBASIC-0.29□□□□□ -2.46
CLIP3Q96DZ5 MIR3681-201ENST00000580089 72 ntBASIC-0.29□□□□□ -2.46
CLIP3Q96DZ5 SNORA17.4-201ENST00000391287 132 ntBASIC-0.3□□□□□ -2.46
CLIP3Q96DZ5 SNORA3B-201ENST00000391305 131 ntBASIC-0.3□□□□□ -2.46
CLIP3Q96DZ5 RPS29P8-201ENST00000445109 171 ntBASIC-0.3□□□□□ -2.46
CLIP3Q96DZ5 MIR4802-201ENST00000581881 80 ntBASIC-0.3□□□□□ -2.46
CLIP3Q96DZ5 AP001180.6-201ENST00000584918 159 ntBASIC-0.3□□□□□ -2.46
CLIP3Q96DZ5 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.31□□□□□ -2.46
CLIP3Q96DZ5 RNU6-822P-201ENST00000362707 106 ntBASIC-0.32□□□□□ -2.46
CLIP3Q96DZ5 RNU6-59P-201ENST00000384787 107 ntBASIC-0.32□□□□□ -2.46
CLIP3Q96DZ5 AC013734.1-201ENST00000619329 111 ntBASIC-0.32□□□□□ -2.46
CLIP3Q96DZ5 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.33□□□□□ -2.46
CLIP3Q96DZ5 RNU6-284P-201ENST00000411105 106 ntBASIC-0.33□□□□□ -2.46
CLIP3Q96DZ5 MIR23C-201ENST00000579846 100 ntBASIC-0.33□□□□□ -2.46
CLIP3Q96DZ5 MIR4636-201ENST00000582271 80 ntBASIC-0.33□□□□□ -2.46
CLIP3Q96DZ5 RNU6-1047P-201ENST00000364418 107 ntBASIC-0.34□□□□□ -2.46
CLIP3Q96DZ5 SNORA32.3-201ENST00000384772 121 ntBASIC-0.34□□□□□ -2.46
CLIP3Q96DZ5 SNORD64-201ENST00000386683 67 ntBASIC-0.34□□□□□ -2.46
CLIP3Q96DZ5 MIR548N-201ENST00000408742 75 ntBASIC-0.34□□□□□ -2.46
CLIP3Q96DZ5 RNU6-300P-201ENST00000459080 104 ntBASIC-0.34□□□□□ -2.46
CLIP3Q96DZ5 MIR548AZ-201ENST00000616567 95 ntBASIC-0.34□□□□□ -2.46
CLIP3Q96DZ5 RNA5SP368-201ENST00000364298 116 ntBASIC-0.35□□□□□ -2.47
CLIP3Q96DZ5 MIR101-1-201ENST00000362265 75 ntBASIC-0.36□□□□□ -2.47
CLIP3Q96DZ5 RNU6-563P-201ENST00000364872 108 ntBASIC-0.36□□□□□ -2.47
CLIP3Q96DZ5 MIR4493-201ENST00000584016 73 ntBASIC-0.36□□□□□ -2.47
CLIP3Q96DZ5 SNORD60-201ENST00000383903 83 ntBASIC-0.37□□□□□ -2.47
CLIP3Q96DZ5 MIR604-201ENST00000384880 94 ntBASIC-0.37□□□□□ -2.47
CLIP3Q96DZ5 MIR581-201ENST00000384895 96 ntBASIC-0.37□□□□□ -2.47
CLIP3Q96DZ5 RNU6-1326P-201ENST00000391262 107 ntBASIC-0.37□□□□□ -2.47
CLIP3Q96DZ5 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.37□□□□□ -2.47
CLIP3Q96DZ5 MIR4317-201ENST00000637586 65 ntBASIC-0.37□□□□□ -2.47
CLIP3Q96DZ5 RNA5SP451-201ENST00000410588 110 ntBASIC-0.38□□□□□ -2.47
CLIP3Q96DZ5 RNY1P9-201ENST00000532431 109 ntBASIC-0.38□□□□□ -2.47
CLIP3Q96DZ5 AC120024.2-201ENST00000576526 175 ntBASIC-0.38□□□□□ -2.47
CLIP3Q96DZ5 MIR6818-201ENST00000621576 65 ntBASIC-0.38□□□□□ -2.47
CLIP3Q96DZ5 Y_RNA.345-201ENST00000365384 92 ntBASIC-0.39□□□□□ -2.47
CLIP3Q96DZ5 RNU6-758P-201ENST00000516292 89 ntBASIC-0.39□□□□□ -2.47
CLIP3Q96DZ5 RNU6-176P-201ENST00000517196 105 ntBASIC-0.39□□□□□ -2.47
CLIP3Q96DZ5 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.4□□□□□ -2.47
CLIP3Q96DZ5 MIR382-201ENST00000637119 76 ntBASIC-0.4□□□□□ -2.47
CLIP3Q96DZ5 MIR224-201ENST00000384889 81 ntBASIC-0.41□□□□□ -2.48
CLIP3Q96DZ5 AL500527.2-201ENST00000454105 95 ntBASIC-0.41□□□□□ -2.48
CLIP3Q96DZ5 Z95118.1-201ENST00000421372 247 ntBASIC-0.42□□□□□ -2.48
CLIP3Q96DZ5 RNU4-63P-201ENST00000411313 118 ntBASIC-0.43□□□□□ -2.48
CLIP3Q96DZ5 RNU6-68P-201ENST00000516576 104 ntBASIC-0.43□□□□□ -2.48
CLIP3Q96DZ5 Y_RNA.223-201ENST00000364290 113 ntBASIC-0.44□□□□□ -2.48
CLIP3Q96DZ5 SNORD114-25-201ENST00000363742 72 ntBASIC-0.45□□□□□ -2.48
CLIP3Q96DZ5 Y_RNA.781-201ENST00000620301 103 ntBASIC-0.45□□□□□ -2.48
CLIP3Q96DZ5 U6.97-201ENST00000636904 101 ntBASIC-0.45□□□□□ -2.48
CLIP3Q96DZ5 RNU6-30P-201ENST00000384561 107 ntBASIC-0.46□□□□□ -2.48
CLIP3Q96DZ5 RNU7-134P-201ENST00000458997 64 ntBASIC-0.46□□□□□ -2.48
CLIP3Q96DZ5 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.46□□□□□ -2.48
CLIP3Q96DZ5 RNU6-164P-201ENST00000364604 103 ntBASIC-0.47□□□□□ -2.48
CLIP3Q96DZ5 RNU6-79P-201ENST00000362511 107 ntBASIC-0.48□□□□□ -2.49
CLIP3Q96DZ5 Y_RNA.206-201ENST00000364136 102 ntBASIC-0.48□□□□□ -2.49
CLIP3Q96DZ5 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.48□□□□□ -2.49
CLIP3Q96DZ5 AC018880.2-201ENST00000414265 201 ntBASIC-0.48□□□□□ -2.49
CLIP3Q96DZ5 MIR6086-201ENST00000638065 55 ntBASIC-0.48□□□□□ -2.49
CLIP3Q96DZ5 MIR196A1-201ENST00000388006 70 ntBASIC-0.49□□□□□ -2.49
CLIP3Q96DZ5 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.49□□□□□ -2.49
CLIP3Q96DZ5 SCARNA17-201ENST00000516183 144 ntBASIC-0.49□□□□□ -2.49
CLIP3Q96DZ5 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.49□□□□□ -2.49
CLIP3Q96DZ5 RNU6-724P-201ENST00000390958 105 ntBASIC-0.5□□□□□ -2.49
CLIP3Q96DZ5 snoU83B.1-201ENST00000517136 88 ntBASIC-0.5□□□□□ -2.49
CLIP3Q96DZ5 U6.103-201ENST00000637085 61 ntBASIC-0.5□□□□□ -2.49
CLIP3Q96DZ5 SNORD18C-201ENST00000362704 69 ntBASIC-0.52□□□□□ -2.49
CLIP3Q96DZ5 SNORD95.1-201ENST00000364099 68 ntBASIC-0.52□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms