Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 Z95118.1-201ENST00000421372 247 ntBASIC0.06□□□□□ -2.4
MSX1P28360 SNORA13-201ENST00000458790 133 ntBASIC0.06□□□□□ -2.4
MSX1P28360 MIR1295B-201ENST00000636144 60 ntBASIC0.06□□□□□ -2.4
MSX1P28360 SNORD114-16-201ENST00000363044 70 ntBASIC0.05□□□□□ -2.4
MSX1P28360 RNA5SP25-201ENST00000410815 110 ntBASIC0.05□□□□□ -2.4
MSX1P28360 MIR4493-201ENST00000584016 73 ntBASIC0.05□□□□□ -2.4
MSX1P28360 AP001180.6-201ENST00000584918 159 ntBASIC0.05□□□□□ -2.4
MSX1P28360 MIR4426-201ENST00000640330 63 ntBASIC0.05□□□□□ -2.4
MSX1P28360 MIR204-201ENST00000385200 110 ntBASIC0.04□□□□□ -2.4
MSX1P28360 MIR3179-1-201ENST00000578940 84 ntBASIC0.04□□□□□ -2.4
MSX1P28360 MIR3179-2-201ENST00000579107 84 ntBASIC0.04□□□□□ -2.4
MSX1P28360 MIR3179-3-201ENST00000579566 84 ntBASIC0.04□□□□□ -2.4
MSX1P28360 MIR3666-201ENST00000607845 111 ntBASIC0.04□□□□□ -2.4
MSX1P28360 MIR3179-4-201ENST00000617599 84 ntBASIC0.04□□□□□ -2.4
MSX1P28360 RNU6-361P-201ENST00000364454 107 ntBASIC0.03□□□□□ -2.4
MSX1P28360 SNORD114-17-201ENST00000364699 75 ntBASIC0.03□□□□□ -2.4
MSX1P28360 RNU6-1008P-201ENST00000384160 104 ntBASIC0.02□□□□□ -2.41
MSX1P28360 AP000533.3-201ENST00000447704 118 ntBASIC0.02□□□□□ -2.41
MSX1P28360 MIR604-201ENST00000384880 94 ntBASIC0.01□□□□□ -2.41
MSX1P28360 MIR4667-201ENST00000578933 66 ntBASIC0.01□□□□□ -2.41
MSX1P28360 Y_RNA.189-201ENST00000363959 112 ntBASIC0□□□□□ -2.41
MSX1P28360 RNA5SP331-201ENST00000364986 107 ntBASIC0□□□□□ -2.41
MSX1P28360 RNY3P8-201ENST00000411366 126 ntBASIC-0.01□□□□□ -2.41
MSX1P28360 MIR4317-201ENST00000637586 65 ntBASIC-0.01□□□□□ -2.41
MSX1P28360 MIR4788-201ENST00000639104 80 ntBASIC-0.01□□□□□ -2.41
MSX1P28360 SNORD114-15-201ENST00000364687 72 ntBASIC-0.02□□□□□ -2.41
MSX1P28360 RNU6-59P-201ENST00000384787 107 ntBASIC-0.02□□□□□ -2.41
MSX1P28360 SNORD4A-201ENST00000459174 72 ntBASIC-0.02□□□□□ -2.41
MSX1P28360 RNA5SP67-201ENST00000516422 131 ntBASIC-0.02□□□□□ -2.41
MSX1P28360 RNY1P9-201ENST00000532431 109 ntBASIC-0.02□□□□□ -2.41
MSX1P28360 MIR202-201ENST00000362219 110 ntBASIC-0.03□□□□□ -2.41
MSX1P28360 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.03□□□□□ -2.41
MSX1P28360 RNU6-1047P-201ENST00000364418 107 ntBASIC-0.04□□□□□ -2.42
MSX1P28360 SNORA17.4-201ENST00000391287 132 ntBASIC-0.04□□□□□ -2.42
MSX1P28360 MIR409-201ENST00000362237 79 ntBASIC-0.05□□□□□ -2.42
MSX1P28360 MIR214-201ENST00000385214 110 ntBASIC-0.05□□□□□ -2.42
MSX1P28360 RNA5SP300-201ENST00000391197 107 ntBASIC-0.05□□□□□ -2.42
MSX1P28360 SNORD114-11-201ENST00000363738 75 ntBASIC-0.06□□□□□ -2.42
MSX1P28360 RNU6-1326P-201ENST00000391262 107 ntBASIC-0.06□□□□□ -2.42
MSX1P28360 RNU6-300P-201ENST00000459080 104 ntBASIC-0.06□□□□□ -2.42
MSX1P28360 MIR101-1-201ENST00000362265 75 ntBASIC-0.07□□□□□ -2.42
MSX1P28360 RNU6-724P-201ENST00000390958 105 ntBASIC-0.07□□□□□ -2.42
MSX1P28360 U6.103-201ENST00000637085 61 ntBASIC-0.07□□□□□ -2.42
MSX1P28360 SNORD95.1-201ENST00000364099 68 ntBASIC-0.08□□□□□ -2.42
MSX1P28360 MIR507-201ENST00000385234 94 ntBASIC-0.08□□□□□ -2.42
MSX1P28360 RPL35AP4-201ENST00000412007 102 ntBASIC-0.08□□□□□ -2.42
MSX1P28360 RNA5SP266-201ENST00000410273 108 ntBASIC-0.09□□□□□ -2.42
MSX1P28360 RNU6-176P-201ENST00000517196 105 ntBASIC-0.09□□□□□ -2.42
MSX1P28360 SNORA32.1-201ENST00000364514 115 ntBASIC-0.1□□□□□ -2.43
MSX1P28360 MIR23C-201ENST00000579846 100 ntBASIC-0.11□□□□□ -2.43
MSX1P28360 SNORD114-28-201ENST00000363610 72 ntBASIC-0.12□□□□□ -2.43
MSX1P28360 Y_RNA.345-201ENST00000365384 92 ntBASIC-0.12□□□□□ -2.43
MSX1P28360 SNORD60-201ENST00000383903 83 ntBASIC-0.12□□□□□ -2.43
MSX1P28360 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.12□□□□□ -2.43
MSX1P28360 MIR4645-201ENST00000583158 77 ntBASIC-0.12□□□□□ -2.43
MSX1P28360 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-0.13□□□□□ -2.43
MSX1P28360 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.14□□□□□ -2.43
MSX1P28360 AC021146.6-201ENST00000514659 117 ntBASIC-0.15□□□□□ -2.43
MSX1P28360 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.16□□□□□ -2.44
MSX1P28360 RPS29P8-201ENST00000445109 171 ntBASIC-0.16□□□□□ -2.44
MSX1P28360 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-0.16□□□□□ -2.44
MSX1P28360 MIR224-201ENST00000384889 81 ntBASIC-0.17□□□□□ -2.44
MSX1P28360 RNA5SP451-201ENST00000410588 110 ntBASIC-0.18□□□□□ -2.44
MSX1P28360 MIR8064-201ENST00000612863 90 ntBASIC-0.18□□□□□ -2.44
MSX1P28360 MIR548N-201ENST00000408742 75 ntBASIC-0.19□□□□□ -2.44
MSX1P28360 AC090616.4-201ENST00000448026 115 ntBASIC-0.2□□□□□ -2.44
MSX1P28360 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.22□□□□□ -2.44
MSX1P28360 RNA5SP26-201ENST00000362406 119 ntBASIC-0.23□□□□□ -2.45
MSX1P28360 MIR548AX-201ENST00000580117 73 ntBASIC-0.24□□□□□ -2.45
MSX1P28360 AC013734.1-201ENST00000619329 111 ntBASIC-0.24□□□□□ -2.45
MSX1P28360 RNU4-63P-201ENST00000411313 118 ntBASIC-0.26□□□□□ -2.45
MSX1P28360 Y_RNA.206-201ENST00000364136 102 ntBASIC-0.27□□□□□ -2.45
MSX1P28360 AC120024.2-201ENST00000576526 175 ntBASIC-0.27□□□□□ -2.45
MSX1P28360 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.27□□□□□ -2.45
MSX1P28360 MIR147A-201ENST00000385079 72 ntBASIC-0.28□□□□□ -2.45
MSX1P28360 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.3□□□□□ -2.46
MSX1P28360 SNX3P1X-201ENST00000414887 175 ntBASIC-0.31□□□□□ -2.46
MSX1P28360 SNORD114-14-201ENST00000362723 75 ntBASIC-0.32□□□□□ -2.46
MSX1P28360 RNU6-563P-201ENST00000364872 108 ntBASIC-0.32□□□□□ -2.46
MSX1P28360 RNU6-431P-201ENST00000383874 107 ntBASIC-0.32□□□□□ -2.46
MSX1P28360 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.32□□□□□ -2.46
MSX1P28360 MIR581-201ENST00000384895 96 ntBASIC-0.32□□□□□ -2.46
MSX1P28360 SNORA3B-201ENST00000391305 131 ntBASIC-0.32□□□□□ -2.46
MSX1P28360 MIR4723-201ENST00000585070 81 ntBASIC-0.32□□□□□ -2.46
MSX1P28360 U6.97-201ENST00000636904 101 ntBASIC-0.32□□□□□ -2.46
MSX1P28360 Y_RNA.129-201ENST00000363392 110 ntBASIC-0.33□□□□□ -2.46
MSX1P28360 Y_RNA.223-201ENST00000364290 113 ntBASIC-0.33□□□□□ -2.46
MSX1P28360 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.33□□□□□ -2.46
MSX1P28360 SNORA32.3-201ENST00000384772 121 ntBASIC-0.33□□□□□ -2.46
MSX1P28360 RNA5SP275-201ENST00000363936 118 ntBASIC-0.34□□□□□ -2.46
MSX1P28360 RNU6-320P-201ENST00000516511 106 ntBASIC-0.34□□□□□ -2.46
MSX1P28360 Y_RNA.781-201ENST00000620301 103 ntBASIC-0.34□□□□□ -2.46
MSX1P28360 SNORD14C-201ENST00000365382 88 ntBASIC-0.35□□□□□ -2.47
MSX1P28360 SNORD126-201ENST00000459475 77 ntBASIC-0.36□□□□□ -2.47
MSX1P28360 MIR196A2-201ENST00000385189 110 ntBASIC-0.37□□□□□ -2.47
MSX1P28360 SNORD64-201ENST00000386683 67 ntBASIC-0.37□□□□□ -2.47
MSX1P28360 RNU6-284P-201ENST00000411105 106 ntBASIC-0.39□□□□□ -2.47
MSX1P28360 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.39□□□□□ -2.47
MSX1P28360 SNORD18C-201ENST00000362704 69 ntBASIC-0.4□□□□□ -2.47
MSX1P28360 AC018880.2-201ENST00000414265 201 ntBASIC-0.4□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 197.3 ms