Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
HLA-CQ95604 SNORA42.1-201ENST00000363515 137 ntBASIC0.5□□□□□ -2.33
HLA-CQ95604 MIR92A1-201ENST00000385233 78 ntBASIC0.5□□□□□ -2.33
HLA-CQ95604 RNU6-1267P-201ENST00000410747 107 ntBASIC0.5□□□□□ -2.33
HLA-CQ95604 SNORA50A-201ENST00000384225 134 ntBASIC0.49□□□□□ -2.33
HLA-CQ95604 RNU7-165P-201ENST00000458864 60 ntBASIC0.49□□□□□ -2.33
HLA-CQ95604 MIR6854-201ENST00000614935 69 ntBASIC0.49□□□□□ -2.33
HLA-CQ95604 RNU7-88P-201ENST00000458752 63 ntBASIC0.47□□□□□ -2.33
HLA-CQ95604 Y_RNA.321-201ENST00000365149 102 ntBASIC0.46□□□□□ -2.34
HLA-CQ95604 RNU7-159P-201ENST00000459284 62 ntBASIC0.46□□□□□ -2.34
HLA-CQ95604 AL627230.5-201ENST00000619807 58 ntBASIC0.46□□□□□ -2.34
HLA-CQ95604 MIR6759-201ENST00000638110 65 ntBASIC0.46□□□□□ -2.34
HLA-CQ95604 RNU6-901P-201ENST00000384593 106 ntBASIC0.45□□□□□ -2.34
HLA-CQ95604 Y_RNA.139-201ENST00000363464 102 ntBASIC0.42□□□□□ -2.34
HLA-CQ95604 AC244250.2-201ENST00000418731 148 ntBASIC0.42□□□□□ -2.34
HLA-CQ95604 RNU6-732P-201ENST00000516033 103 ntBASIC0.42□□□□□ -2.34
HLA-CQ95604 MIR4636-201ENST00000582271 80 ntBASIC0.42□□□□□ -2.34
HLA-CQ95604 RNU6-46P-201ENST00000383860 107 ntBASIC0.41□□□□□ -2.34
HLA-CQ95604 RNA5SP134-201ENST00000516492 96 ntBASIC0.4□□□□□ -2.35
HLA-CQ95604 RNU6-1238P-201ENST00000517215 102 ntBASIC0.4□□□□□ -2.35
HLA-CQ95604 MIR548AL-201ENST00000578416 97 ntBASIC0.4□□□□□ -2.35
HLA-CQ95604 MIR5704-201ENST00000584029 77 ntBASIC0.4□□□□□ -2.35
HLA-CQ95604 SNORD56B-201ENST00000384713 71 ntBASIC0.39□□□□□ -2.35
HLA-CQ95604 MIR593-201ENST00000384856 100 ntBASIC0.39□□□□□ -2.35
HLA-CQ95604 MIR145-201ENST00000384967 88 ntBASIC0.39□□□□□ -2.35
HLA-CQ95604 MIR3170-201ENST00000582699 77 ntBASIC0.39□□□□□ -2.35
HLA-CQ95604 RNU6-1111P-201ENST00000391118 107 ntBASIC0.38□□□□□ -2.35
HLA-CQ95604 MTRNR2L9-201ENST00000622562 75 ntBASIC0.38□□□□□ -2.35
HLA-CQ95604 RNU6-1233P-201ENST00000362922 102 ntBASIC0.36□□□□□ -2.35
HLA-CQ95604 RNA5SP214-201ENST00000363378 118 ntBASIC0.36□□□□□ -2.35
HLA-CQ95604 MIR5589-201ENST00000579442 60 ntBASIC0.36□□□□□ -2.35
HLA-CQ95604 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.36□□□□□ -2.35
HLA-CQ95604 MIR655-201ENST00000362159 97 ntBASIC0.35□□□□□ -2.35
HLA-CQ95604 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.35□□□□□ -2.35
HLA-CQ95604 AC114755.3-201ENST00000481111 251 ntBASIC0.35□□□□□ -2.35
HLA-CQ95604 MIR6718-201ENST00000616153 80 ntBASIC0.35□□□□□ -2.35
HLA-CQ95604 MIR8068-201ENST00000618032 68 ntBASIC0.35□□□□□ -2.35
HLA-CQ95604 SNORD74.6-201ENST00000364796 70 ntBASIC0.34□□□□□ -2.36
HLA-CQ95604 AC104692.1-201ENST00000472406 90 ntBASIC0.34□□□□□ -2.36
HLA-CQ95604 SNORD114-9-201ENST00000364370 72 ntBASIC0.32□□□□□ -2.36
HLA-CQ95604 MIR124-2-201ENST00000385081 109 ntBASIC0.32□□□□□ -2.36
HLA-CQ95604 SNORD63.2-201ENST00000516303 64 ntBASIC0.32□□□□□ -2.36
HLA-CQ95604 MIR545-201ENST00000385085 106 ntBASIC0.31□□□□□ -2.36
HLA-CQ95604 MIR5190-201ENST00000581537 80 ntBASIC0.31□□□□□ -2.36
HLA-CQ95604 MIR4802-201ENST00000581881 80 ntBASIC0.3□□□□□ -2.36
HLA-CQ95604 MIR4280-201ENST00000582178 76 ntBASIC0.3□□□□□ -2.36
HLA-CQ95604 SNORD49B-201ENST00000365172 72 ntBASIC0.29□□□□□ -2.36
HLA-CQ95604 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.29□□□□□ -2.36
HLA-CQ95604 MIR6851-201ENST00000617060 67 ntBASIC0.29□□□□□ -2.36
HLA-CQ95604 snoU13.19-201ENST00000459148 104 ntBASIC0.28□□□□□ -2.36
HLA-CQ95604 RNU6-1204P-201ENST00000363948 107 ntBASIC0.27□□□□□ -2.37
HLA-CQ95604 MIR1468-201ENST00000410600 86 ntBASIC0.27□□□□□ -2.37
HLA-CQ95604 MIR29B1-201ENST00000385015 81 ntBASIC0.25□□□□□ -2.37
HLA-CQ95604 SNORA27.2-201ENST00000363365 126 ntBASIC0.24□□□□□ -2.37
HLA-CQ95604 MIR548Q-201ENST00000408404 100 ntBASIC0.24□□□□□ -2.37
HLA-CQ95604 MIR1295B-201ENST00000636144 60 ntBASIC0.24□□□□□ -2.37
HLA-CQ95604 RNA5SP66-201ENST00000517178 101 ntBASIC0.23□□□□□ -2.37
HLA-CQ95604 MIR4263-201ENST00000584745 83 ntBASIC0.23□□□□□ -2.37
HLA-CQ95604 SNORD114-5-201ENST00000362928 70 ntBASIC0.22□□□□□ -2.37
HLA-CQ95604 RNU6-974P-201ENST00000384099 108 ntBASIC0.22□□□□□ -2.37
HLA-CQ95604 SNORD19-201ENST00000391191 68 ntBASIC0.22□□□□□ -2.37
HLA-CQ95604 Y_RNA.699-201ENST00000516803 93 ntBASIC0.22□□□□□ -2.37
HLA-CQ95604 Y_RNA.185-201ENST00000363894 100 ntBASIC0.21□□□□□ -2.38
HLA-CQ95604 SNORA26.4-201ENST00000391188 123 ntBASIC0.21□□□□□ -2.38
HLA-CQ95604 Z95118.1-201ENST00000421372 247 ntBASIC0.21□□□□□ -2.38
HLA-CQ95604 AL445193.1-201ENST00000441183 141 ntBASIC0.21□□□□□ -2.38
HLA-CQ95604 SNORA13-201ENST00000458790 133 ntBASIC0.21□□□□□ -2.38
HLA-CQ95604 RNA5SP25-201ENST00000410815 110 ntBASIC0.2□□□□□ -2.38
HLA-CQ95604 MIR5093-201ENST00000583199 100 ntBASIC0.2□□□□□ -2.38
HLA-CQ95604 AC093726.3-201ENST00000637588 150 ntBASIC0.2□□□□□ -2.38
HLA-CQ95604 SNORD115-33-201ENST00000363723 82 ntBASIC0.19□□□□□ -2.38
HLA-CQ95604 MIR4290-201ENST00000583807 95 ntBASIC0.19□□□□□ -2.38
HLA-CQ95604 RNU6-929P-201ENST00000384429 107 ntBASIC0.18□□□□□ -2.38
HLA-CQ95604 MIR518B-201ENST00000385127 83 ntBASIC0.18□□□□□ -2.38
HLA-CQ95604 AL353691.2-201ENST00000443795 59 ntBASIC0.18□□□□□ -2.38
HLA-CQ95604 MIR4768-201ENST00000585270 74 ntBASIC0.18□□□□□ -2.38
HLA-CQ95604 SNORD18.2-201ENST00000459604 70 ntBASIC0.17□□□□□ -2.38
HLA-CQ95604 SNORA18.1-201ENST00000363418 128 ntBASIC0.16□□□□□ -2.38
HLA-CQ95604 RNU6-30P-201ENST00000384561 107 ntBASIC0.16□□□□□ -2.38
HLA-CQ95604 RNU6-530P-201ENST00000391180 107 ntBASIC0.16□□□□□ -2.38
HLA-CQ95604 AL590491.3-201ENST00000610731 82 ntBASIC0.16□□□□□ -2.38
HLA-CQ95604 SNORD38.3-201ENST00000516599 73 ntBASIC0.14□□□□□ -2.39
HLA-CQ95604 MIR520D-201ENST00000385002 87 ntBASIC0.13□□□□□ -2.39
HLA-CQ95604 RNU6-1250P-201ENST00000391218 107 ntBASIC0.13□□□□□ -2.39
HLA-CQ95604 RNU6-758P-201ENST00000516292 89 ntBASIC0.13□□□□□ -2.39
HLA-CQ95604 MIR5683-201ENST00000636514 76 ntBASIC0.13□□□□□ -2.39
HLA-CQ95604 MIR371B-201ENST00000638082 66 ntBASIC0.13□□□□□ -2.39
HLA-CQ95604 RNU6-742P-201ENST00000365289 107 ntBASIC0.12□□□□□ -2.39
HLA-CQ95604 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC0.12□□□□□ -2.39
HLA-CQ95604 MIR1295A-201ENST00000408463 79 ntBASIC0.11□□□□□ -2.39
HLA-CQ95604 IGLVI-20-201ENST00000519296 130 ntBASIC0.11□□□□□ -2.39
HLA-CQ95604 MIR3666-201ENST00000607845 111 ntBASIC0.11□□□□□ -2.39
HLA-CQ95604 RNU6-258P-201ENST00000390884 101 ntBASIC0.1□□□□□ -2.39
HLA-CQ95604 SNORD75.1-201ENST00000408373 60 ntBASIC0.1□□□□□ -2.39
HLA-CQ95604 RNA5SP169-201ENST00000517268 117 ntBASIC0.09□□□□□ -2.4
HLA-CQ95604 SNORD114-31-201ENST00000363219 75 ntBASIC0.08□□□□□ -2.4
HLA-CQ95604 SNORD114-15-201ENST00000364687 72 ntBASIC0.08□□□□□ -2.4
HLA-CQ95604 SNORD22.1-201ENST00000516331 125 ntBASIC0.08□□□□□ -2.4
HLA-CQ95604 RNU6-986P-201ENST00000363133 102 ntBASIC0.07□□□□□ -2.4
HLA-CQ95604 RNA5SP368-201ENST00000364298 116 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 175 ms