Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNA5SP173-201ENST00000364857 136 ntBASIC-1.92□□□□□ -2.72
CHD9Q3L8U1 MIR125B1-201ENST00000385236 88 ntBASIC-1.92□□□□□ -2.72
CHD9Q3L8U1 AL158147.1-201ENST00000443970 75 ntBASIC-1.92□□□□□ -2.72
CHD9Q3L8U1 RNU6-668P-201ENST00000364180 107 ntBASIC-1.92□□□□□ -2.72
CHD9Q3L8U1 RNU4-40P-201ENST00000364351 143 ntBASIC-1.92□□□□□ -2.72
CHD9Q3L8U1 SNORD113-3-201ENST00000364830 72 ntBASIC-1.92□□□□□ -2.72
CHD9Q3L8U1 RNY3P8-201ENST00000411366 126 ntBASIC-1.92□□□□□ -2.72
CHD9Q3L8U1 MIR2052-201ENST00000636055 55 ntBASIC-1.92□□□□□ -2.72
CHD9Q3L8U1 SNORA81.3-201ENST00000517283 198 ntBASIC-1.92□□□□□ -2.72
CHD9Q3L8U1 MIR3144-201ENST00000579460 79 ntBASIC-1.92□□□□□ -2.72
CHD9Q3L8U1 SNORD60.1-201ENST00000362451 73 ntBASIC-1.93□□□□□ -2.72
CHD9Q3L8U1 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.93□□□□□ -2.72
CHD9Q3L8U1 Y_RNA.649-201ENST00000459077 103 ntBASIC-1.93□□□□□ -2.72
CHD9Q3L8U1 RNU6-822P-201ENST00000362707 106 ntBASIC-1.93□□□□□ -2.72
CHD9Q3L8U1 RNU6-834P-201ENST00000362367 110 ntBASIC-1.94□□□□□ -2.72
CHD9Q3L8U1 SNORA8.1-201ENST00000384250 140 ntBASIC-1.94□□□□□ -2.72
CHD9Q3L8U1 Y_RNA.619-201ENST00000410951 90 ntBASIC-1.94□□□□□ -2.72
CHD9Q3L8U1 AC093729.1-201ENST00000513074 128 ntBASIC-1.94□□□□□ -2.72
CHD9Q3L8U1 RNU6-474P-201ENST00000384243 107 ntBASIC-1.94□□□□□ -2.72
CHD9Q3L8U1 RNU6-172P-201ENST00000411000 93 ntBASIC-1.94□□□□□ -2.72
CHD9Q3L8U1 RNU6-557P-201ENST00000516842 110 ntBASIC-1.94□□□□□ -2.72
CHD9Q3L8U1 Y_RNA.202-201ENST00000364083 110 ntBASIC-1.95□□□□□ -2.72
CHD9Q3L8U1 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.95□□□□□ -2.72
CHD9Q3L8U1 AL359920.1-201ENST00000618332 176 ntBASIC-1.95□□□□□ -2.72
CHD9Q3L8U1 RNU6-810P-201ENST00000364001 107 ntBASIC-1.95□□□□□ -2.72
CHD9Q3L8U1 Y_RNA.431-201ENST00000384086 102 ntBASIC-1.95□□□□□ -2.72
CHD9Q3L8U1 RNU7-197P-201ENST00000458836 62 ntBASIC-1.95□□□□□ -2.72
CHD9Q3L8U1 MIR7110-201ENST00000612638 86 ntBASIC-1.95□□□□□ -2.72
CHD9Q3L8U1 MIR4426-201ENST00000640330 63 ntBASIC-1.95□□□□□ -2.72
CHD9Q3L8U1 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.96□□□□□ -2.72
CHD9Q3L8U1 RNA5SP449-201ENST00000516871 130 ntBASIC-1.96□□□□□ -2.72
CHD9Q3L8U1 RNU6-915P-201ENST00000364943 103 ntBASIC-1.96□□□□□ -2.72
CHD9Q3L8U1 Y_RNA.398-201ENST00000383952 99 ntBASIC-1.96□□□□□ -2.72
CHD9Q3L8U1 Y_RNA.17-201ENST00000362433 111 ntBASIC-1.97□□□□□ -2.72
CHD9Q3L8U1 Y_RNA.574-201ENST00000384766 95 ntBASIC-1.97□□□□□ -2.72
CHD9Q3L8U1 Y_RNA.272-201ENST00000364696 102 ntBASIC-1.97□□□□□ -2.73
CHD9Q3L8U1 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.97□□□□□ -2.73
CHD9Q3L8U1 AC139453.2-201ENST00000487255 133 ntBASIC-1.97□□□□□ -2.73
CHD9Q3L8U1 RNU6-426P-201ENST00000516464 97 ntBASIC-1.97□□□□□ -2.73
CHD9Q3L8U1 MIR3171-201ENST00000584270 74 ntBASIC-1.97□□□□□ -2.73
CHD9Q3L8U1 SNORA17.4-201ENST00000391287 132 ntBASIC-1.98□□□□□ -2.73
CHD9Q3L8U1 RNU7-107P-201ENST00000459121 61 ntBASIC-1.98□□□□□ -2.73
CHD9Q3L8U1 SNORD113.1-201ENST00000363280 73 ntBASIC-1.98□□□□□ -2.73
CHD9Q3L8U1 Y_RNA.580-201ENST00000391004 95 ntBASIC-1.98□□□□□ -2.73
CHD9Q3L8U1 MIR4668-201ENST00000582284 70 ntBASIC-1.99□□□□□ -2.73
CHD9Q3L8U1 SNORD58C-201ENST00000365223 64 ntBASIC-1.99□□□□□ -2.73
CHD9Q3L8U1 MIR154-201ENST00000385243 84 ntBASIC-1.99□□□□□ -2.73
CHD9Q3L8U1 Y_RNA.818-201ENST00000618813 71 ntBASIC-1.99□□□□□ -2.73
CHD9Q3L8U1 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-2□□□□□ -2.73
CHD9Q3L8U1 RNU6-330P-201ENST00000363015 107 ntBASIC-2□□□□□ -2.73
CHD9Q3L8U1 Y_RNA.129-201ENST00000363392 110 ntBASIC-2□□□□□ -2.73
CHD9Q3L8U1 RNU6-940P-201ENST00000363433 104 ntBASIC-2□□□□□ -2.73
CHD9Q3L8U1 RNU6-686P-201ENST00000364839 107 ntBASIC-2□□□□□ -2.73
CHD9Q3L8U1 RNU6-590P-201ENST00000365039 107 ntBASIC-2□□□□□ -2.73
CHD9Q3L8U1 AC022559.1-201ENST00000520905 205 ntBASIC-2□□□□□ -2.73
CHD9Q3L8U1 RNU6-1325P-201ENST00000364905 105 ntBASIC-2□□□□□ -2.73
CHD9Q3L8U1 SNORD45A-201ENST00000384512 84 ntBASIC-2□□□□□ -2.73
CHD9Q3L8U1 MTATP8P2-201ENST00000435212 202 ntBASIC-2□□□□□ -2.73
CHD9Q3L8U1 MIR3128-201ENST00000581957 66 ntBASIC-2□□□□□ -2.73
CHD9Q3L8U1 AC006160.2-201ENST00000637708 154 ntBASIC-2□□□□□ -2.73
CHD9Q3L8U1 Y_RNA.620-201ENST00000411009 88 ntBASIC-2.01□□□□□ -2.73
CHD9Q3L8U1 RNU6-1134P-201ENST00000365156 101 ntBASIC-2.01□□□□□ -2.73
CHD9Q3L8U1 SNORD116-18-201ENST00000383961 92 ntBASIC-2.01□□□□□ -2.73
CHD9Q3L8U1 MIR664A-201ENST00000626086 82 ntBASIC-2.01□□□□□ -2.73
CHD9Q3L8U1 AP001318.4-201ENST00000616637 121 ntBASIC-2.02□□□□□ -2.73
CHD9Q3L8U1 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.02□□□□□ -2.73
CHD9Q3L8U1 Y_RNA.356-201ENST00000365475 113 ntBASIC-2.02□□□□□ -2.73
CHD9Q3L8U1 SNORD33.1-201ENST00000516213 88 ntBASIC-2.02□□□□□ -2.73
CHD9Q3L8U1 RNU6-70P-201ENST00000516438 60 ntBASIC-2.02□□□□□ -2.73
CHD9Q3L8U1 RNU6-633P-201ENST00000362612 103 ntBASIC-2.03□□□□□ -2.73
CHD9Q3L8U1 SNORD45.2-201ENST00000363552 72 ntBASIC-2.03□□□□□ -2.73
CHD9Q3L8U1 AC074348.1-201ENST00000426503 132 ntBASIC-2.03□□□□□ -2.73
CHD9Q3L8U1 RNU6-1020P-201ENST00000363684 107 ntBASIC-2.03□□□□□ -2.73
CHD9Q3L8U1 RNU6-574P-201ENST00000384265 107 ntBASIC-2.03□□□□□ -2.73
CHD9Q3L8U1 Y_RNA.680-201ENST00000516441 93 ntBASIC-2.03□□□□□ -2.73
CHD9Q3L8U1 AC026407.1-201ENST00000518369 204 ntBASIC-2.03□□□□□ -2.73
CHD9Q3L8U1 Y_RNA.93-201ENST00000363066 109 ntBASIC-2.04□□□□□ -2.74
CHD9Q3L8U1 RNU6-300P-201ENST00000459080 104 ntBASIC-2.04□□□□□ -2.74
CHD9Q3L8U1 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.04□□□□□ -2.74
CHD9Q3L8U1 RNU6-1169P-201ENST00000363537 103 ntBASIC-2.04□□□□□ -2.74
CHD9Q3L8U1 SNORA19-201ENST00000384737 128 ntBASIC-2.04□□□□□ -2.74
CHD9Q3L8U1 RNU7-119P-201ENST00000459279 63 ntBASIC-2.04□□□□□ -2.74
CHD9Q3L8U1 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.04□□□□□ -2.74
CHD9Q3L8U1 AL353621.2-201ENST00000605340 133 ntBASIC-2.04□□□□□ -2.74
CHD9Q3L8U1 RNU6-176P-201ENST00000517196 105 ntBASIC-2.04□□□□□ -2.74
CHD9Q3L8U1 RNU6-1296P-201ENST00000383879 107 ntBASIC-2.05□□□□□ -2.74
CHD9Q3L8U1 Y_RNA.460-201ENST00000384255 102 ntBASIC-2.05□□□□□ -2.74
CHD9Q3L8U1 AL157777.2-201ENST00000258070 137 ntBASIC-2.06□□□□□ -2.74
CHD9Q3L8U1 SNORA40B-201ENST00000385573 128 ntBASIC-2.06□□□□□ -2.74
CHD9Q3L8U1 SNORD116.2-201ENST00000391251 93 ntBASIC-2.06□□□□□ -2.74
CHD9Q3L8U1 Y_RNA.604-201ENST00000410574 102 ntBASIC-2.06□□□□□ -2.74
CHD9Q3L8U1 AC141273.2-201ENST00000618989 130 ntBASIC-2.06□□□□□ -2.74
CHD9Q3L8U1 RNU6-530P-201ENST00000391180 107 ntBASIC-2.07□□□□□ -2.74
CHD9Q3L8U1 U7.3-201ENST00000616123 62 ntBASIC-2.07□□□□□ -2.74
CHD9Q3L8U1 Y_RNA.138-201ENST00000363462 102 ntBASIC-2.07□□□□□ -2.74
CHD9Q3L8U1 RNU6-394P-201ENST00000410735 107 ntBASIC-2.08□□□□□ -2.74
CHD9Q3L8U1 RNU6-789P-201ENST00000517105 102 ntBASIC-2.08□□□□□ -2.74
CHD9Q3L8U1 RNU6-111P-201ENST00000517179 105 ntBASIC-2.08□□□□□ -2.74
CHD9Q3L8U1 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.08□□□□□ -2.74
CHD9Q3L8U1 MTND5P20-201ENST00000448677 143 ntBASIC-2.08□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 187.3 ms