Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNU6-668P-201ENST00000364180 107 ntBASIC-0.71□□□□□ -2.52
HDAC4P56524 SNORD116-24-201ENST00000384549 92 ntBASIC-0.71□□□□□ -2.52
HDAC4P56524 RNU6-279P-201ENST00000391297 101 ntBASIC-0.71□□□□□ -2.52
HDAC4P56524 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.71□□□□□ -2.52
HDAC4P56524 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.72□□□□□ -2.52
HDAC4P56524 MIR154-201ENST00000385243 84 ntBASIC-0.72□□□□□ -2.52
HDAC4P56524 SNORD78.1-201ENST00000390866 65 ntBASIC-0.72□□□□□ -2.52
HDAC4P56524 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.72□□□□□ -2.52
HDAC4P56524 RNU6-857P-201ENST00000515893 110 ntBASIC-0.72□□□□□ -2.52
HDAC4P56524 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.72□□□□□ -2.52
HDAC4P56524 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.72□□□□□ -2.52
HDAC4P56524 FAS-AS1.1-201ENST00000615327 126 ntBASIC-0.72□□□□□ -2.52
HDAC4P56524 U4.4-201ENST00000620626 117 ntBASIC-0.72□□□□□ -2.52
HDAC4P56524 RNU6-698P-201ENST00000363523 107 ntBASIC-0.73□□□□□ -2.53
HDAC4P56524 RNU6-34P-201ENST00000364874 107 ntBASIC-0.73□□□□□ -2.53
HDAC4P56524 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.73□□□□□ -2.53
HDAC4P56524 U7.4-201ENST00000614961 63 ntBASIC-0.73□□□□□ -2.53
HDAC4P56524 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.74□□□□□ -2.53
HDAC4P56524 SNORD114-17-201ENST00000364699 75 ntBASIC-0.74□□□□□ -2.53
HDAC4P56524 RNU6-431P-201ENST00000383874 107 ntBASIC-0.74□□□□□ -2.53
HDAC4P56524 RNU6-246P-201ENST00000384702 107 ntBASIC-0.74□□□□□ -2.53
HDAC4P56524 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.74□□□□□ -2.53
HDAC4P56524 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.75□□□□□ -2.53
HDAC4P56524 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.75□□□□□ -2.53
HDAC4P56524 RNA5SP225-201ENST00000410874 135 ntBASIC-0.75□□□□□ -2.53
HDAC4P56524 RNU6-523P-201ENST00000516304 54 ntBASIC-0.75□□□□□ -2.53
HDAC4P56524 RNU6-1015P-201ENST00000517121 99 ntBASIC-0.75□□□□□ -2.53
HDAC4P56524 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.76□□□□□ -2.53
HDAC4P56524 RNU6-411P-201ENST00000384451 107 ntBASIC-0.76□□□□□ -2.53
HDAC4P56524 SNORA26.4-201ENST00000391188 123 ntBASIC-0.76□□□□□ -2.53
HDAC4P56524 MIR378F-201ENST00000578143 78 ntBASIC-0.76□□□□□ -2.53
HDAC4P56524 RNU6-895P-201ENST00000384125 103 ntBASIC-0.77□□□□□ -2.53
HDAC4P56524 SNORD64-201ENST00000386683 67 ntBASIC-0.77□□□□□ -2.53
HDAC4P56524 RNA5SP461-201ENST00000516451 104 ntBASIC-0.77□□□□□ -2.53
HDAC4P56524 MIR548V-201ENST00000584165 80 ntBASIC-0.77□□□□□ -2.53
HDAC4P56524 SNORD115-33-201ENST00000363723 82 ntBASIC-0.78□□□□□ -2.53
HDAC4P56524 SNORD114-25-201ENST00000363742 72 ntBASIC-0.78□□□□□ -2.53
HDAC4P56524 RNU6-24P-201ENST00000384440 107 ntBASIC-0.78□□□□□ -2.53
HDAC4P56524 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.79□□□□□ -2.54
HDAC4P56524 SNORD114-3-201ENST00000364969 75 ntBASIC-0.79□□□□□ -2.54
HDAC4P56524 SNORD83B-201ENST00000386745 93 ntBASIC-0.79□□□□□ -2.54
HDAC4P56524 MIR3115-201ENST00000577915 68 ntBASIC-0.79□□□□□ -2.54
HDAC4P56524 MIR382-201ENST00000637119 76 ntBASIC-0.79□□□□□ -2.54
HDAC4P56524 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.8□□□□□ -2.54
HDAC4P56524 MIR630-201ENST00000384957 97 ntBASIC-0.8□□□□□ -2.54
HDAC4P56524 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.81□□□□□ -2.54
HDAC4P56524 AL500527.2-201ENST00000454105 95 ntBASIC-0.81□□□□□ -2.54
HDAC4P56524 RNU6-458P-201ENST00000384179 107 ntBASIC-0.82□□□□□ -2.54
HDAC4P56524 MIR527-201ENST00000385244 85 ntBASIC-0.82□□□□□ -2.54
HDAC4P56524 SNORD113-2-201ENST00000391082 72 ntBASIC-0.82□□□□□ -2.54
HDAC4P56524 RNU6-634P-201ENST00000459134 106 ntBASIC-0.82□□□□□ -2.54
HDAC4P56524 SNORD63.1-201ENST00000516178 80 ntBASIC-0.82□□□□□ -2.54
HDAC4P56524 U7.5-201ENST00000517224 61 ntBASIC-0.82□□□□□ -2.54
HDAC4P56524 U6.58-201ENST00000613107 107 ntBASIC-0.82□□□□□ -2.54
HDAC4P56524 RNU6-540P-201ENST00000384622 101 ntBASIC-0.83□□□□□ -2.54
HDAC4P56524 RNU6-732P-201ENST00000516033 103 ntBASIC-0.83□□□□□ -2.54
HDAC4P56524 MIR429-201ENST00000362106 83 ntBASIC-0.84□□□□□ -2.54
HDAC4P56524 RNA5SP192-201ENST00000364404 120 ntBASIC-0.84□□□□□ -2.54
HDAC4P56524 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.84□□□□□ -2.54
HDAC4P56524 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.84□□□□□ -2.54
HDAC4P56524 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.85□□□□□ -2.55
HDAC4P56524 MIR29B1-201ENST00000385015 81 ntBASIC-0.85□□□□□ -2.55
HDAC4P56524 MIR889-201ENST00000401280 79 ntBASIC-0.85□□□□□ -2.55
HDAC4P56524 AL353691.2-201ENST00000443795 59 ntBASIC-0.85□□□□□ -2.55
HDAC4P56524 RNU7-88P-201ENST00000458752 63 ntBASIC-0.86□□□□□ -2.55
HDAC4P56524 RNA5SP180-201ENST00000516181 101 ntBASIC-0.86□□□□□ -2.55
HDAC4P56524 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.87□□□□□ -2.55
HDAC4P56524 SNORD19-201ENST00000391191 68 ntBASIC-0.87□□□□□ -2.55
HDAC4P56524 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.87□□□□□ -2.55
HDAC4P56524 snoU83B.1-201ENST00000517136 88 ntBASIC-0.88□□□□□ -2.55
HDAC4P56524 MIR4499-201ENST00000584834 69 ntBASIC-0.88□□□□□ -2.55
HDAC4P56524 Y_RNA.545-201ENST00000384652 105 ntBASIC-0.89□□□□□ -2.55
HDAC4P56524 RNU6-542P-201ENST00000516405 103 ntBASIC-0.89□□□□□ -2.55
HDAC4P56524 Y_RNA.685-201ENST00000516532 108 ntBASIC-0.89□□□□□ -2.55
HDAC4P56524 uc_338.19-201ENST00000616808 99 ntBASIC-0.89□□□□□ -2.55
HDAC4P56524 MIR365A-201ENST00000362260 87 ntBASIC-0.9□□□□□ -2.55
HDAC4P56524 SNORD116-16-201ENST00000384533 92 ntBASIC-0.9□□□□□ -2.55
HDAC4P56524 SNORA41B-201ENST00000384785 128 ntBASIC-0.9□□□□□ -2.55
HDAC4P56524 RNU6-696P-201ENST00000390834 107 ntBASIC-0.9□□□□□ -2.55
HDAC4P56524 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.9□□□□□ -2.55
HDAC4P56524 AP002795.1-201ENST00000534879 84 ntBASIC-0.91□□□□□ -2.56
HDAC4P56524 RNU6-1275P-201ENST00000391087 107 ntBASIC-0.92□□□□□ -2.56
HDAC4P56524 RNU6-663P-201ENST00000391105 106 ntBASIC-0.92□□□□□ -2.56
HDAC4P56524 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.92□□□□□ -2.56
HDAC4P56524 MIR6818-201ENST00000621576 65 ntBASIC-0.92□□□□□ -2.56
HDAC4P56524 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.92□□□□□ -2.56
HDAC4P56524 Y_RNA.443-201ENST00000384135 111 ntBASIC-0.93□□□□□ -2.56
HDAC4P56524 RNU6-871P-201ENST00000516122 100 ntBASIC-0.93□□□□□ -2.56
HDAC4P56524 MIR5683-201ENST00000636514 76 ntBASIC-0.93□□□□□ -2.56
HDAC4P56524 RNA5SP26-201ENST00000362406 119 ntBASIC-0.94□□□□□ -2.56
HDAC4P56524 RNU6-598P-201ENST00000364017 105 ntBASIC-0.94□□□□□ -2.56
HDAC4P56524 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.94□□□□□ -2.56
HDAC4P56524 MIR3165-201ENST00000579874 75 ntBASIC-0.94□□□□□ -2.56
HDAC4P56524 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.95□□□□□ -2.56
HDAC4P56524 MIR4441-201ENST00000582623 100 ntBASIC-0.95□□□□□ -2.56
HDAC4P56524 MIR4490-201ENST00000582647 84 ntBASIC-0.95□□□□□ -2.56
HDAC4P56524 RNU6-630P-201ENST00000391258 106 ntBASIC-0.96□□□□□ -2.56
HDAC4P56524 MIR1285-2-201ENST00000408311 88 ntBASIC-0.96□□□□□ -2.56
HDAC4P56524 RNU6-776P-201ENST00000364403 104 ntBASIC-0.97□□□□□ -2.56
HDAC4P56524 RNU6-1022P-201ENST00000365049 104 ntBASIC-0.97□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 193.7 ms