Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU6-49P-201ENST00000384256 107 ntBASIC-0.89□□□□□ -2.55
CTCFP49711 RNU6-576P-201ENST00000390854 102 ntBASIC-0.89□□□□□ -2.55
CTCFP49711 MIR548V-201ENST00000584165 80 ntBASIC-0.89□□□□□ -2.55
CTCFP49711 RNU6-598P-201ENST00000364017 105 ntBASIC-0.9□□□□□ -2.55
CTCFP49711 RNU6-153P-201ENST00000364422 104 ntBASIC-0.9□□□□□ -2.55
CTCFP49711 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.9□□□□□ -2.55
CTCFP49711 AC090616.4-201ENST00000448026 115 ntBASIC-0.9□□□□□ -2.55
CTCFP49711 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.9□□□□□ -2.55
CTCFP49711 MIR4484-201ENST00000582855 83 ntBASIC-0.9□□□□□ -2.55
CTCFP49711 SNORD113.1-201ENST00000363280 73 ntBASIC-0.91□□□□□ -2.56
CTCFP49711 RNA5SP215-201ENST00000363440 122 ntBASIC-0.91□□□□□ -2.56
CTCFP49711 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.91□□□□□ -2.56
CTCFP49711 RNU6-979P-201ENST00000383896 107 ntBASIC-0.91□□□□□ -2.56
CTCFP49711 MIR548C-201ENST00000384815 97 ntBASIC-0.91□□□□□ -2.56
CTCFP49711 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.91□□□□□ -2.56
CTCFP49711 MIR4490-201ENST00000582647 84 ntBASIC-0.91□□□□□ -2.56
CTCFP49711 AC091912.2-201ENST00000624798 167 ntBASIC-0.91□□□□□ -2.56
CTCFP49711 RNU6-608P-201ENST00000383927 104 ntBASIC-0.92□□□□□ -2.56
CTCFP49711 MIR8485-201ENST00000401372 91 ntBASIC-0.92□□□□□ -2.56
CTCFP49711 MIR5588-201ENST00000581890 63 ntBASIC-0.92□□□□□ -2.56
CTCFP49711 AC138207.3-201ENST00000585289 166 ntBASIC-0.92□□□□□ -2.56
CTCFP49711 MIR8053-201ENST00000613344 75 ntBASIC-0.92□□□□□ -2.56
CTCFP49711 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.93□□□□□ -2.56
CTCFP49711 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.93□□□□□ -2.56
CTCFP49711 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.93□□□□□ -2.56
CTCFP49711 MIR520D-201ENST00000385002 87 ntBASIC-0.93□□□□□ -2.56
CTCFP49711 MIR889-201ENST00000401280 79 ntBASIC-0.93□□□□□ -2.56
CTCFP49711 MIR6502-201ENST00000617296 76 ntBASIC-0.93□□□□□ -2.56
CTCFP49711 MIR664A-201ENST00000626086 82 ntBASIC-0.93□□□□□ -2.56
CTCFP49711 SNORD116-16-201ENST00000384533 92 ntBASIC-0.94□□□□□ -2.56
CTCFP49711 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.94□□□□□ -2.56
CTCFP49711 RPL35AP4-201ENST00000412007 102 ntBASIC-0.94□□□□□ -2.56
CTCFP49711 MIR6874-201ENST00000635894 71 ntBASIC-0.94□□□□□ -2.56
CTCFP49711 MIR429-201ENST00000362106 83 ntBASIC-0.95□□□□□ -2.56
CTCFP49711 SNORD45A-201ENST00000384512 84 ntBASIC-0.95□□□□□ -2.56
CTCFP49711 MIR630-201ENST00000384957 97 ntBASIC-0.95□□□□□ -2.56
CTCFP49711 SNORD113-2-201ENST00000391082 72 ntBASIC-0.95□□□□□ -2.56
CTCFP49711 RNU6-630P-201ENST00000391258 106 ntBASIC-0.95□□□□□ -2.56
CTCFP49711 MTND4LP1-201ENST00000446263 157 ntBASIC-0.95□□□□□ -2.56
CTCFP49711 RNU7-171P-201ENST00000459581 62 ntBASIC-0.95□□□□□ -2.56
CTCFP49711 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-0.95□□□□□ -2.56
CTCFP49711 RNU6-79P-201ENST00000362511 107 ntBASIC-0.96□□□□□ -2.56
CTCFP49711 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.96□□□□□ -2.56
CTCFP49711 SNORD116-24-201ENST00000384549 92 ntBASIC-0.96□□□□□ -2.56
CTCFP49711 SNORA41B-201ENST00000384785 128 ntBASIC-0.96□□□□□ -2.56
CTCFP49711 MIR548Q-201ENST00000408404 100 ntBASIC-0.96□□□□□ -2.56
CTCFP49711 RNU6-706P-201ENST00000517229 104 ntBASIC-0.96□□□□□ -2.56
CTCFP49711 MIR4712-201ENST00000583750 82 ntBASIC-0.96□□□□□ -2.56
CTCFP49711 U2.18-201ENST00000622185 84 ntBASIC-0.96□□□□□ -2.56
CTCFP49711 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.97□□□□□ -2.56
CTCFP49711 RNU6-1152P-201ENST00000384576 107 ntBASIC-0.97□□□□□ -2.56
CTCFP49711 RNU6-380P-201ENST00000410207 107 ntBASIC-0.97□□□□□ -2.56
CTCFP49711 SNORD1B-201ENST00000363091 84 ntBASIC-0.98□□□□□ -2.57
CTCFP49711 RNU6-668P-201ENST00000364180 107 ntBASIC-0.98□□□□□ -2.57
CTCFP49711 MIR1245B-201ENST00000636115 69 ntBASIC-0.98□□□□□ -2.57
CTCFP49711 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.99□□□□□ -2.57
CTCFP49711 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.99□□□□□ -2.57
CTCFP49711 RNY1P1-201ENST00000364372 112 ntBASIC-0.99□□□□□ -2.57
CTCFP49711 Y_RNA.340-201ENST00000365330 92 ntBASIC-0.99□□□□□ -2.57
CTCFP49711 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.99□□□□□ -2.57
CTCFP49711 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.99□□□□□ -2.57
CTCFP49711 RNA5SP180-201ENST00000516181 101 ntBASIC-0.99□□□□□ -2.57
CTCFP49711 MIR3115-201ENST00000577915 68 ntBASIC-0.99□□□□□ -2.57
CTCFP49711 MIR3170-201ENST00000582699 77 ntBASIC-0.99□□□□□ -2.57
CTCFP49711 MTRNR2L9-201ENST00000622562 75 ntBASIC-0.99□□□□□ -2.57
CTCFP49711 RNA5SP192-201ENST00000364404 120 ntBASIC-1□□□□□ -2.57
CTCFP49711 RNY4P30-201ENST00000410216 95 ntBASIC-1□□□□□ -2.57
CTCFP49711 RNU6-1267P-201ENST00000410747 107 ntBASIC-1□□□□□ -2.57
CTCFP49711 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1□□□□□ -2.57
CTCFP49711 IGLL4P-201ENST00000614590 133 ntBASIC-1□□□□□ -2.57
CTCFP49711 Y_RNA.788-201ENST00000622394 112 ntBASIC-1□□□□□ -2.57
CTCFP49711 RNA5SP173-201ENST00000364857 136 ntBASIC-1.01□□□□□ -2.57
CTCFP49711 RNU6-400P-201ENST00000391173 106 ntBASIC-1.01□□□□□ -2.57
CTCFP49711 AC018880.2-201ENST00000414265 201 ntBASIC-1.01□□□□□ -2.57
CTCFP49711 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.01□□□□□ -2.57
CTCFP49711 SNORD115-31-201ENST00000365318 82 ntBASIC-1.02□□□□□ -2.57
CTCFP49711 MIR548AA1-201ENST00000384971 97 ntBASIC-1.02□□□□□ -2.57
CTCFP49711 RNU6-258P-201ENST00000390884 101 ntBASIC-1.02□□□□□ -2.57
CTCFP49711 MIR4666B-201ENST00000578142 81 ntBASIC-1.02□□□□□ -2.57
CTCFP49711 MIR4770-201ENST00000579149 58 ntBASIC-1.02□□□□□ -2.57
CTCFP49711 MIR4520-1-201ENST00000582609 70 ntBASIC-1.02□□□□□ -2.57
CTCFP49711 RNU6-787P-201ENST00000384032 107 ntBASIC-1.03□□□□□ -2.57
CTCFP49711 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.03□□□□□ -2.57
CTCFP49711 MIR5591-201ENST00000578248 65 ntBASIC-1.03□□□□□ -2.57
CTCFP49711 MIR23C-201ENST00000579846 100 ntBASIC-1.03□□□□□ -2.57
CTCFP49711 RNU6-687P-201ENST00000516443 89 ntBASIC-1.04□□□□□ -2.58
CTCFP49711 MIR3134-201ENST00000579433 74 ntBASIC-1.04□□□□□ -2.58
CTCFP49711 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.05□□□□□ -2.58
CTCFP49711 RNA5SP86-201ENST00000390869 98 ntBASIC-1.05□□□□□ -2.58
CTCFP49711 RNU6-70P-201ENST00000516438 60 ntBASIC-1.05□□□□□ -2.58
CTCFP49711 MIR3165-201ENST00000579874 75 ntBASIC-1.05□□□□□ -2.58
CTCFP49711 MIR7978-201ENST00000636158 59 ntBASIC-1.05□□□□□ -2.58
CTCFP49711 MIR125B1-201ENST00000385236 88 ntBASIC-1.06□□□□□ -2.58
CTCFP49711 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.06□□□□□ -2.58
CTCFP49711 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.06□□□□□ -2.58
CTCFP49711 HLA-S-202ENST00000425174 53 ntBASIC-1.06□□□□□ -2.58
CTCFP49711 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.07□□□□□ -2.58
CTCFP49711 MIR450A2-201ENST00000385022 100 ntBASIC-1.07□□□□□ -2.58
CTCFP49711 MIR154-201ENST00000385243 84 ntBASIC-1.07□□□□□ -2.58
CTCFP49711 RNU7-151P-201ENST00000516930 53 ntBASIC-1.07□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 147.6 ms