Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.59□□□□□ -2.5
SOX3P41225 RNU6-34P-201ENST00000364874 107 ntBASIC-0.59□□□□□ -2.5
SOX3P41225 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.59□□□□□ -2.5
SOX3P41225 MIR889-201ENST00000401280 79 ntBASIC-0.59□□□□□ -2.5
SOX3P41225 RNA5SP266-201ENST00000410273 108 ntBASIC-0.59□□□□□ -2.5
SOX3P41225 RNU7-88P-201ENST00000458752 63 ntBASIC-0.59□□□□□ -2.5
SOX3P41225 U7.5-201ENST00000517224 61 ntBASIC-0.59□□□□□ -2.5
SOX3P41225 U7.4-201ENST00000614961 63 ntBASIC-0.59□□□□□ -2.5
SOX3P41225 MIR409-201ENST00000362237 79 ntBASIC-0.6□□□□□ -2.51
SOX3P41225 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.6□□□□□ -2.51
SOX3P41225 RNU6-10P-201ENST00000384036 107 ntBASIC-0.6□□□□□ -2.51
SOX3P41225 RNU6-924P-201ENST00000362926 108 ntBASIC-0.61□□□□□ -2.51
SOX3P41225 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.61□□□□□ -2.51
SOX3P41225 RNU6-431P-201ENST00000383874 107 ntBASIC-0.61□□□□□ -2.51
SOX3P41225 RNU6-411P-201ENST00000384451 107 ntBASIC-0.61□□□□□ -2.51
SOX3P41225 MIR196A1-201ENST00000388006 70 ntBASIC-0.61□□□□□ -2.51
SOX3P41225 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.61□□□□□ -2.51
SOX3P41225 RNA5SP215-201ENST00000363440 122 ntBASIC-0.62□□□□□ -2.51
SOX3P41225 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.62□□□□□ -2.51
SOX3P41225 RNU6-540P-201ENST00000384622 101 ntBASIC-0.62□□□□□ -2.51
SOX3P41225 SNORD113-2-201ENST00000391082 72 ntBASIC-0.62□□□□□ -2.51
SOX3P41225 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.62□□□□□ -2.51
SOX3P41225 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.63□□□□□ -2.51
SOX3P41225 RNU6-458P-201ENST00000384179 107 ntBASIC-0.63□□□□□ -2.51
SOX3P41225 RNU6-24P-201ENST00000384440 107 ntBASIC-0.63□□□□□ -2.51
SOX3P41225 AP002795.1-201ENST00000534879 84 ntBASIC-0.63□□□□□ -2.51
SOX3P41225 MIR3115-201ENST00000577915 68 ntBASIC-0.63□□□□□ -2.51
SOX3P41225 U6.58-201ENST00000613107 107 ntBASIC-0.63□□□□□ -2.51
SOX3P41225 SNORD114-25-201ENST00000363742 72 ntBASIC-0.64□□□□□ -2.51
SOX3P41225 RNU6-895P-201ENST00000384125 103 ntBASIC-0.64□□□□□ -2.51
SOX3P41225 SNORA41B-201ENST00000384785 128 ntBASIC-0.64□□□□□ -2.51
SOX3P41225 SNORD19-201ENST00000391191 68 ntBASIC-0.64□□□□□ -2.51
SOX3P41225 RNU6-634P-201ENST00000459134 106 ntBASIC-0.64□□□□□ -2.51
SOX3P41225 SNORD63.1-201ENST00000516178 80 ntBASIC-0.64□□□□□ -2.51
SOX3P41225 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.65□□□□□ -2.51
SOX3P41225 MIR147A-201ENST00000385079 72 ntBASIC-0.65□□□□□ -2.51
SOX3P41225 SNORD64-201ENST00000386683 67 ntBASIC-0.65□□□□□ -2.51
SOX3P41225 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.65□□□□□ -2.51
SOX3P41225 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.65□□□□□ -2.51
SOX3P41225 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.66□□□□□ -2.52
SOX3P41225 MIR527-201ENST00000385244 85 ntBASIC-0.66□□□□□ -2.52
SOX3P41225 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.66□□□□□ -2.52
SOX3P41225 SNORA26.4-201ENST00000391188 123 ntBASIC-0.66□□□□□ -2.52
SOX3P41225 RNU6-732P-201ENST00000516033 103 ntBASIC-0.66□□□□□ -2.52
SOX3P41225 RNU6-598P-201ENST00000364017 105 ntBASIC-0.67□□□□□ -2.52
SOX3P41225 AL500527.2-201ENST00000454105 95 ntBASIC-0.67□□□□□ -2.52
SOX3P41225 RNA5SP461-201ENST00000516451 104 ntBASIC-0.67□□□□□ -2.52
SOX3P41225 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.68□□□□□ -2.52
SOX3P41225 Y_RNA.545-201ENST00000384652 105 ntBASIC-0.68□□□□□ -2.52
SOX3P41225 RNU6-1275P-201ENST00000391087 107 ntBASIC-0.69□□□□□ -2.52
SOX3P41225 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.69□□□□□ -2.52
SOX3P41225 MIR378F-201ENST00000578143 78 ntBASIC-0.69□□□□□ -2.52
SOX3P41225 SNORD115-33-201ENST00000363723 82 ntBASIC-0.7□□□□□ -2.52
SOX3P41225 RNA5SP192-201ENST00000364404 120 ntBASIC-0.7□□□□□ -2.52
SOX3P41225 SNORD83B-201ENST00000386745 93 ntBASIC-0.7□□□□□ -2.52
SOX3P41225 U2.18-201ENST00000622185 84 ntBASIC-0.7□□□□□ -2.52
SOX3P41225 RNA5SP331-201ENST00000364986 107 ntBASIC-0.71□□□□□ -2.52
SOX3P41225 Y_RNA.443-201ENST00000384135 111 ntBASIC-0.71□□□□□ -2.52
SOX3P41225 SNORD116-16-201ENST00000384533 92 ntBASIC-0.71□□□□□ -2.52
SOX3P41225 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-0.71□□□□□ -2.52
SOX3P41225 RNU6-663P-201ENST00000391105 106 ntBASIC-0.71□□□□□ -2.52
SOX3P41225 MIR382-201ENST00000637119 76 ntBASIC-0.71□□□□□ -2.52
SOX3P41225 Y_RNA.565-201ENST00000384719 101 ntBASIC-0.73□□□□□ -2.53
SOX3P41225 RNU6-696P-201ENST00000390834 107 ntBASIC-0.73□□□□□ -2.53
SOX3P41225 RNU6-630P-201ENST00000391258 106 ntBASIC-0.73□□□□□ -2.53
SOX3P41225 Y_RNA.685-201ENST00000516532 108 ntBASIC-0.73□□□□□ -2.53
SOX3P41225 SNORD1B-201ENST00000363091 84 ntBASIC-0.74□□□□□ -2.53
SOX3P41225 RNU6-776P-201ENST00000364403 104 ntBASIC-0.74□□□□□ -2.53
SOX3P41225 RNU6-1022P-201ENST00000365049 104 ntBASIC-0.74□□□□□ -2.53
SOX3P41225 MIR1468-201ENST00000410600 86 ntBASIC-0.74□□□□□ -2.53
SOX3P41225 RNA5SP180-201ENST00000516181 101 ntBASIC-0.74□□□□□ -2.53
SOX3P41225 RNU6-542P-201ENST00000516405 103 ntBASIC-0.74□□□□□ -2.53
SOX3P41225 SNX3P1X-201ENST00000414887 175 ntBASIC-0.75□□□□□ -2.53
SOX3P41225 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.75□□□□□ -2.53
SOX3P41225 MIR4306-201ENST00000583390 91 ntBASIC-0.75□□□□□ -2.53
SOX3P41225 RNA5SP26-201ENST00000362406 119 ntBASIC-0.76□□□□□ -2.53
SOX3P41225 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.76□□□□□ -2.53
SOX3P41225 SNORD30.1-201ENST00000391309 70 ntBASIC-0.76□□□□□ -2.53
SOX3P41225 AL353691.2-201ENST00000443795 59 ntBASIC-0.76□□□□□ -2.53
SOX3P41225 MIR4499-201ENST00000584834 69 ntBASIC-0.76□□□□□ -2.53
SOX3P41225 AC005520.4-201ENST00000604337 90 ntBASIC-0.76□□□□□ -2.53
SOX3P41225 U4.2-201ENST00000618561 85 ntBASIC-0.76□□□□□ -2.53
SOX3P41225 MIR520D-201ENST00000385002 87 ntBASIC-0.77□□□□□ -2.53
SOX3P41225 MIR601-201ENST00000385256 79 ntBASIC-0.77□□□□□ -2.53
SOX3P41225 MIR5683-201ENST00000636514 76 ntBASIC-0.77□□□□□ -2.53
SOX3P41225 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.77□□□□□ -2.53
SOX3P41225 RNU7-134P-201ENST00000458997 64 ntBASIC-0.78□□□□□ -2.53
SOX3P41225 RNU6-92P-201ENST00000605893 104 ntBASIC-0.78□□□□□ -2.53
SOX3P41225 U6.111-201ENST00000636093 83 ntBASIC-0.78□□□□□ -2.53
SOX3P41225 SNORD60.1-201ENST00000362451 73 ntBASIC-0.79□□□□□ -2.54
SOX3P41225 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.79□□□□□ -2.54
SOX3P41225 SNORA25.4-201ENST00000363666 124 ntBASIC-0.8□□□□□ -2.54
SOX3P41225 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.8□□□□□ -2.54
SOX3P41225 MIR548Q-201ENST00000408404 100 ntBASIC-0.8□□□□□ -2.54
SOX3P41225 RPL35AP4-201ENST00000412007 102 ntBASIC-0.8□□□□□ -2.54
SOX3P41225 MIR429-201ENST00000362106 83 ntBASIC-0.81□□□□□ -2.54
SOX3P41225 RNU6-649P-201ENST00000384463 107 ntBASIC-0.81□□□□□ -2.54
SOX3P41225 MIR507-201ENST00000385234 94 ntBASIC-0.81□□□□□ -2.54
SOX3P41225 MIR3165-201ENST00000579874 75 ntBASIC-0.81□□□□□ -2.54
SOX3P41225 MIR198-201ENST00000637333 62 ntBASIC-0.81□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 7.7 ms