Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNA5SP67-201ENST00000516422 131 ntBASIC1.03□□□□□ -2.24
COL9A1P20849 RNA5SP169-201ENST00000517268 117 ntBASIC1.03□□□□□ -2.24
COL9A1P20849 AL391099.1-201ENST00000624635 187 ntBASIC1.03□□□□□ -2.24
COL9A1P20849 MIR4698-201ENST00000577795 80 ntBASIC1.02□□□□□ -2.25
COL9A1P20849 MIR409-201ENST00000362237 79 ntBASIC1.01□□□□□ -2.25
COL9A1P20849 RNU4-38P-201ENST00000364472 129 ntBASIC1.01□□□□□ -2.25
COL9A1P20849 RNY3P8-201ENST00000411366 126 ntBASIC1.01□□□□□ -2.25
COL9A1P20849 RNU6-732P-201ENST00000516033 103 ntBASIC1.01□□□□□ -2.25
COL9A1P20849 RNU6-973P-201ENST00000364690 107 ntBASIC1□□□□□ -2.25
COL9A1P20849 SNORD115.2-201ENST00000391126 59 ntBASIC1□□□□□ -2.25
COL9A1P20849 MIR1285-1-201ENST00000408593 84 ntBASIC1□□□□□ -2.25
COL9A1P20849 RNU7-55P-201ENST00000459426 62 ntBASIC1□□□□□ -2.25
COL9A1P20849 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC1□□□□□ -2.25
COL9A1P20849 uc_338.17-201ENST00000619633 179 ntBASIC1□□□□□ -2.25
COL9A1P20849 SNORD19-201ENST00000391191 68 ntBASIC0.99□□□□□ -2.25
COL9A1P20849 MIR548Q-201ENST00000408404 100 ntBASIC0.99□□□□□ -2.25
COL9A1P20849 AC108740.1-201ENST00000498629 225 ntBASIC0.99□□□□□ -2.25
COL9A1P20849 MIR4653-201ENST00000585107 83 ntBASIC0.99□□□□□ -2.25
COL9A1P20849 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
COL9A1P20849 RNA5SP25-201ENST00000410815 110 ntBASIC0.98□□□□□ -2.25
COL9A1P20849 SNORD60-201ENST00000383903 83 ntBASIC0.97□□□□□ -2.25
COL9A1P20849 MIR548N-201ENST00000408742 75 ntBASIC0.97□□□□□ -2.25
COL9A1P20849 MIR4802-201ENST00000581881 80 ntBASIC0.97□□□□□ -2.25
COL9A1P20849 SNORD44.1-201ENST00000363202 61 ntBASIC0.96□□□□□ -2.26
COL9A1P20849 MIR643-201ENST00000385267 97 ntBASIC0.96□□□□□ -2.26
COL9A1P20849 PSMC1P5-201ENST00000512850 177 ntBASIC0.96□□□□□ -2.26
COL9A1P20849 RNU6-836P-201ENST00000362920 107 ntBASIC0.95□□□□□ -2.26
COL9A1P20849 RNU6-900P-201ENST00000384498 102 ntBASIC0.95□□□□□ -2.26
COL9A1P20849 RNU6-1233P-201ENST00000362922 102 ntBASIC0.94□□□□□ -2.26
COL9A1P20849 Y_RNA.406-201ENST00000383984 100 ntBASIC0.94□□□□□ -2.26
COL9A1P20849 RNA5SP266-201ENST00000410273 108 ntBASIC0.94□□□□□ -2.26
COL9A1P20849 AC096531.1-201ENST00000419107 107 ntBASIC0.94□□□□□ -2.26
COL9A1P20849 RNA5SP63-201ENST00000391225 112 ntBASIC0.93□□□□□ -2.26
COL9A1P20849 SNORA62.5-201ENST00000516634 120 ntBASIC0.93□□□□□ -2.26
COL9A1P20849 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.93□□□□□ -2.26
COL9A1P20849 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
COL9A1P20849 RNA5SP347-201ENST00000362445 119 ntBASIC0.92□□□□□ -2.26
COL9A1P20849 Y_RNA.129-201ENST00000363392 110 ntBASIC0.92□□□□□ -2.26
COL9A1P20849 RNU6-608P-201ENST00000383927 104 ntBASIC0.92□□□□□ -2.26
COL9A1P20849 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.92□□□□□ -2.26
COL9A1P20849 uc_338.36-201ENST00000622331 158 ntBASIC0.92□□□□□ -2.26
COL9A1P20849 SNORA42.1-201ENST00000363515 137 ntBASIC0.91□□□□□ -2.26
COL9A1P20849 RNA5SP224-201ENST00000365069 126 ntBASIC0.91□□□□□ -2.26
COL9A1P20849 Z95118.1-201ENST00000421372 247 ntBASIC0.91□□□□□ -2.26
COL9A1P20849 RNU6-68P-201ENST00000516576 104 ntBASIC0.91□□□□□ -2.26
COL9A1P20849 Y_RNA.320-201ENST00000365144 102 ntBASIC0.9□□□□□ -2.27
COL9A1P20849 Y_RNA.457-201ENST00000384237 111 ntBASIC0.9□□□□□ -2.27
COL9A1P20849 MIR508-201ENST00000384857 115 ntBASIC0.9□□□□□ -2.27
COL9A1P20849 MIR6835-201ENST00000621552 64 ntBASIC0.9□□□□□ -2.27
COL9A1P20849 SNORD114-15-201ENST00000364687 72 ntBASIC0.89□□□□□ -2.27
COL9A1P20849 AP002795.1-201ENST00000534879 84 ntBASIC0.89□□□□□ -2.27
COL9A1P20849 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC0.89□□□□□ -2.27
COL9A1P20849 Y_RNA.260-201ENST00000364628 101 ntBASIC0.88□□□□□ -2.27
COL9A1P20849 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.88□□□□□ -2.27
COL9A1P20849 MIR581-201ENST00000384895 96 ntBASIC0.87□□□□□ -2.27
COL9A1P20849 RPL39P28-201ENST00000465655 155 ntBASIC0.87□□□□□ -2.27
COL9A1P20849 RNU6-127P-201ENST00000390897 107 ntBASIC0.86□□□□□ -2.27
COL9A1P20849 CR383656.4-201ENST00000546909 122 ntBASIC0.86□□□□□ -2.27
COL9A1P20849 MIR4514-201ENST00000581410 57 ntBASIC0.86□□□□□ -2.27
COL9A1P20849 AC103810.9-201ENST00000606688 112 ntBASIC0.86□□□□□ -2.27
COL9A1P20849 IGLVI-20-201ENST00000519296 130 ntBASIC0.85□□□□□ -2.27
COL9A1P20849 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.85□□□□□ -2.27
COL9A1P20849 Y_RNA.223-201ENST00000364290 113 ntBASIC0.84□□□□□ -2.27
COL9A1P20849 RNU6-455P-201ENST00000384681 107 ntBASIC0.84□□□□□ -2.27
COL9A1P20849 MIR124-2-201ENST00000385081 109 ntBASIC0.84□□□□□ -2.27
COL9A1P20849 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.84□□□□□ -2.27
COL9A1P20849 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC0.84□□□□□ -2.27
COL9A1P20849 MIR6514-201ENST00000622549 70 ntBASIC0.84□□□□□ -2.27
COL9A1P20849 MIR5683-201ENST00000636514 76 ntBASIC0.84□□□□□ -2.27
COL9A1P20849 MIR148A-201ENST00000362215 68 ntBASIC0.83□□□□□ -2.28
COL9A1P20849 RNA5SP368-201ENST00000364298 116 ntBASIC0.83□□□□□ -2.28
COL9A1P20849 Y_RNA.335-201ENST00000365299 96 ntBASIC0.83□□□□□ -2.28
COL9A1P20849 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.83□□□□□ -2.28
COL9A1P20849 MIR8068-201ENST00000618032 68 ntBASIC0.83□□□□□ -2.28
COL9A1P20849 MIR5087-201ENST00000635826 76 ntBASIC0.83□□□□□ -2.28
COL9A1P20849 MIR379-201ENST00000362218 67 ntBASIC0.82□□□□□ -2.28
COL9A1P20849 RPL35AP4-201ENST00000412007 102 ntBASIC0.82□□□□□ -2.28
COL9A1P20849 RNU6-758P-201ENST00000516292 89 ntBASIC0.82□□□□□ -2.28
COL9A1P20849 MIR5704-201ENST00000584029 77 ntBASIC0.82□□□□□ -2.28
COL9A1P20849 SNORD45C-201ENST00000383893 79 ntBASIC0.81□□□□□ -2.28
COL9A1P20849 MIR6854-201ENST00000614935 69 ntBASIC0.81□□□□□ -2.28
COL9A1P20849 AC013734.1-201ENST00000619329 111 ntBASIC0.81□□□□□ -2.28
COL9A1P20849 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
COL9A1P20849 MIR892B-201ENST00000401279 77 ntBASIC0.79□□□□□ -2.28
COL9A1P20849 MIR548AJ2-201ENST00000408539 92 ntBASIC0.79□□□□□ -2.28
COL9A1P20849 AL353691.2-201ENST00000443795 59 ntBASIC0.79□□□□□ -2.28
COL9A1P20849 FTX_4.1-201ENST00000616291 147 ntBASIC0.79□□□□□ -2.28
COL9A1P20849 MIR103A1-201ENST00000362165 78 ntBASIC0.78□□□□□ -2.28
COL9A1P20849 SNORD114-2-201ENST00000363953 78 ntBASIC0.78□□□□□ -2.28
COL9A1P20849 RNU6-929P-201ENST00000384429 107 ntBASIC0.78□□□□□ -2.28
COL9A1P20849 SNORA26.4-201ENST00000391188 123 ntBASIC0.78□□□□□ -2.28
COL9A1P20849 SNORA68.3-201ENST00000515906 83 ntBASIC0.78□□□□□ -2.28
COL9A1P20849 RNU6-1169P-201ENST00000363537 103 ntBASIC0.77□□□□□ -2.29
COL9A1P20849 AC114755.3-201ENST00000481111 251 ntBASIC0.77□□□□□ -2.29
COL9A1P20849 RNU6-180P-201ENST00000516697 61 ntBASIC0.77□□□□□ -2.29
COL9A1P20849 SNORD115-33-201ENST00000363723 82 ntBASIC0.76□□□□□ -2.29
COL9A1P20849 RNU6-351P-201ENST00000516097 100 ntBASIC0.76□□□□□ -2.29
COL9A1P20849 MIR23C-201ENST00000579846 100 ntBASIC0.76□□□□□ -2.29
COL9A1P20849 MIRLET7D-201ENST00000362263 87 ntBASIC0.75□□□□□ -2.29
COL9A1P20849 Y_RNA.185-201ENST00000363894 100 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 7.9 ms