Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 U2.22-201ENST00000636441 106 ntBASIC-0.91□□□□□ -2.56
MSH4O15457 RNU6-668P-201ENST00000364180 107 ntBASIC-0.92□□□□□ -2.56
MSH4O15457 RNU6-153P-201ENST00000364422 104 ntBASIC-0.92□□□□□ -2.56
MSH4O15457 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.92□□□□□ -2.56
MSH4O15457 SNORD45A-201ENST00000384512 84 ntBASIC-0.92□□□□□ -2.56
MSH4O15457 RNY4P30-201ENST00000410216 95 ntBASIC-0.92□□□□□ -2.56
MSH4O15457 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.92□□□□□ -2.56
MSH4O15457 MIR429-201ENST00000362106 83 ntBASIC-0.93□□□□□ -2.56
MSH4O15457 RNU6-598P-201ENST00000364017 105 ntBASIC-0.93□□□□□ -2.56
MSH4O15457 MIR630-201ENST00000384957 97 ntBASIC-0.93□□□□□ -2.56
MSH4O15457 RNU6-576P-201ENST00000390854 102 ntBASIC-0.93□□□□□ -2.56
MSH4O15457 MIR4306-201ENST00000583390 91 ntBASIC-0.93□□□□□ -2.56
MSH4O15457 MIR4712-201ENST00000583750 82 ntBASIC-0.93□□□□□ -2.56
MSH4O15457 MIR1245B-201ENST00000636115 69 ntBASIC-0.93□□□□□ -2.56
MSH4O15457 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.94□□□□□ -2.56
MSH4O15457 SNORD113-2-201ENST00000391082 72 ntBASIC-0.94□□□□□ -2.56
MSH4O15457 MIR548Q-201ENST00000408404 100 ntBASIC-0.94□□□□□ -2.56
MSH4O15457 RNU6-164P-201ENST00000364604 103 ntBASIC-0.95□□□□□ -2.56
MSH4O15457 RNA5SP331-201ENST00000364986 107 ntBASIC-0.95□□□□□ -2.56
MSH4O15457 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.96□□□□□ -2.56
MSH4O15457 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.96□□□□□ -2.56
MSH4O15457 RPL35AP4-201ENST00000412007 102 ntBASIC-0.96□□□□□ -2.56
MSH4O15457 AC090616.4-201ENST00000448026 115 ntBASIC-0.96□□□□□ -2.56
MSH4O15457 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.96□□□□□ -2.56
MSH4O15457 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.96□□□□□ -2.56
MSH4O15457 MIR494-201ENST00000349529 81 ntBASIC-0.97□□□□□ -2.56
MSH4O15457 SNORD116-16-201ENST00000384533 92 ntBASIC-0.97□□□□□ -2.56
MSH4O15457 SNORD116-24-201ENST00000384549 92 ntBASIC-0.97□□□□□ -2.56
MSH4O15457 SNX3P1X-201ENST00000414887 175 ntBASIC-0.97□□□□□ -2.56
MSH4O15457 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.98□□□□□ -2.57
MSH4O15457 MIR450A2-201ENST00000385022 100 ntBASIC-0.98□□□□□ -2.57
MSH4O15457 RNU6-630P-201ENST00000391258 106 ntBASIC-0.98□□□□□ -2.57
MSH4O15457 RNU6-70P-201ENST00000516438 60 ntBASIC-0.98□□□□□ -2.57
MSH4O15457 MIR4666B-201ENST00000578142 81 ntBASIC-0.98□□□□□ -2.57
MSH4O15457 U2.18-201ENST00000622185 84 ntBASIC-0.98□□□□□ -2.57
MSH4O15457 RNU6-294P-201ENST00000364999 102 ntBASIC-0.99□□□□□ -2.57
MSH4O15457 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.99□□□□□ -2.57
MSH4O15457 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.99□□□□□ -2.57
MSH4O15457 RNU6-242P-201ENST00000384359 107 ntBASIC-0.99□□□□□ -2.57
MSH4O15457 SNORA41B-201ENST00000384785 128 ntBASIC-0.99□□□□□ -2.57
MSH4O15457 MIR520D-201ENST00000385002 87 ntBASIC-0.99□□□□□ -2.57
MSH4O15457 Y_RNA.788-201ENST00000622394 112 ntBASIC-0.99□□□□□ -2.57
MSH4O15457 AC091912.2-201ENST00000624798 167 ntBASIC-0.99□□□□□ -2.57
MSH4O15457 MIR198-201ENST00000637333 62 ntBASIC-0.99□□□□□ -2.57
MSH4O15457 RNA5SP173-201ENST00000364857 136 ntBASIC-1□□□□□ -2.57
MSH4O15457 RNU6-608P-201ENST00000383927 104 ntBASIC-1□□□□□ -2.57
MSH4O15457 RNU6-787P-201ENST00000384032 107 ntBASIC-1□□□□□ -2.57
MSH4O15457 MIR154-201ENST00000385243 84 ntBASIC-1□□□□□ -2.57
MSH4O15457 MIR8485-201ENST00000401372 91 ntBASIC-1□□□□□ -2.57
MSH4O15457 SNORD115-31-201ENST00000365318 82 ntBASIC-1.01□□□□□ -2.57
MSH4O15457 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.01□□□□□ -2.57
MSH4O15457 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.01□□□□□ -2.57
MSH4O15457 MIR3134-201ENST00000579433 74 ntBASIC-1.01□□□□□ -2.57
MSH4O15457 MIR6874-201ENST00000635894 71 ntBASIC-1.01□□□□□ -2.57
MSH4O15457 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.02□□□□□ -2.57
MSH4O15457 MIR548AA1-201ENST00000384971 97 ntBASIC-1.02□□□□□ -2.57
MSH4O15457 MIR601-201ENST00000385256 79 ntBASIC-1.02□□□□□ -2.57
MSH4O15457 MIR889-201ENST00000401280 79 ntBASIC-1.02□□□□□ -2.57
MSH4O15457 RNU6-687P-201ENST00000516443 89 ntBASIC-1.02□□□□□ -2.57
MSH4O15457 RNA5SP461-201ENST00000516451 104 ntBASIC-1.02□□□□□ -2.57
MSH4O15457 MIR5582-201ENST00000579697 68 ntBASIC-1.02□□□□□ -2.57
MSH4O15457 SNORD1B-201ENST00000363091 84 ntBASIC-1.03□□□□□ -2.57
MSH4O15457 RNU6-895P-201ENST00000384125 103 ntBASIC-1.03□□□□□ -2.57
MSH4O15457 RNU6-820P-201ENST00000384273 107 ntBASIC-1.03□□□□□ -2.57
MSH4O15457 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.03□□□□□ -2.57
MSH4O15457 MIR3170-201ENST00000582699 77 ntBASIC-1.03□□□□□ -2.57
MSH4O15457 AC138207.3-201ENST00000585289 166 ntBASIC-1.03□□□□□ -2.57
MSH4O15457 RNA5SP180-201ENST00000516181 101 ntBASIC-1.04□□□□□ -2.58
MSH4O15457 MIR6502-201ENST00000617296 76 ntBASIC-1.04□□□□□ -2.58
MSH4O15457 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.04□□□□□ -2.58
MSH4O15457 MIR1468-201ENST00000410600 86 ntBASIC-1.05□□□□□ -2.58
MSH4O15457 AC018880.2-201ENST00000414265 201 ntBASIC-1.05□□□□□ -2.58
MSH4O15457 RNU6-706P-201ENST00000517229 104 ntBASIC-1.05□□□□□ -2.58
MSH4O15457 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.05□□□□□ -2.58
MSH4O15457 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.05□□□□□ -2.58
MSH4O15457 RNU6-79P-201ENST00000362511 107 ntBASIC-1.06□□□□□ -2.58
MSH4O15457 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.06□□□□□ -2.58
MSH4O15457 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.06□□□□□ -2.58
MSH4O15457 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.07□□□□□ -2.58
MSH4O15457 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.07□□□□□ -2.58
MSH4O15457 RNU6-542P-201ENST00000516405 103 ntBASIC-1.07□□□□□ -2.58
MSH4O15457 MIR23C-201ENST00000579846 100 ntBASIC-1.07□□□□□ -2.58
MSH4O15457 AC062037.1-201ENST00000605302 128 ntBASIC-1.07□□□□□ -2.58
MSH4O15457 RNU6-411P-201ENST00000384451 107 ntBASIC-1.08□□□□□ -2.58
MSH4O15457 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-1.08□□□□□ -2.58
MSH4O15457 RNU7-151P-201ENST00000516930 53 ntBASIC-1.09□□□□□ -2.58
MSH4O15457 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.09□□□□□ -2.58
MSH4O15457 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.1□□□□□ -2.59
MSH4O15457 RNU6-258P-201ENST00000390884 101 ntBASIC-1.1□□□□□ -2.59
MSH4O15457 RNU6-172P-201ENST00000411000 93 ntBASIC-1.1□□□□□ -2.59
MSH4O15457 RNU6-92P-201ENST00000605893 104 ntBASIC-1.1□□□□□ -2.59
MSH4O15457 U7.4-201ENST00000614961 63 ntBASIC-1.1□□□□□ -2.59
MSH4O15457 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.1□□□□□ -2.59
MSH4O15457 RNU6-400P-201ENST00000391173 106 ntBASIC-1.11□□□□□ -2.59
MSH4O15457 RNU6-995P-201ENST00000391244 107 ntBASIC-1.11□□□□□ -2.59
MSH4O15457 MIR1285-2-201ENST00000408311 88 ntBASIC-1.11□□□□□ -2.59
MSH4O15457 MIR7978-201ENST00000636158 59 ntBASIC-1.11□□□□□ -2.59
MSH4O15457 RNU6-247P-201ENST00000362636 107 ntBASIC-1.12□□□□□ -2.59
MSH4O15457 RNU6-540P-201ENST00000384622 101 ntBASIC-1.12□□□□□ -2.59
MSH4O15457 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.12□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms