Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RNU6-973P-201ENST00000364690 107 ntBASIC1.13□□□□□ -2.23
VPS9D1Q9Y2B5 MIR1285-1-201ENST00000408593 84 ntBASIC1.13□□□□□ -2.23
VPS9D1Q9Y2B5 RNU7-55P-201ENST00000459426 62 ntBASIC1.13□□□□□ -2.23
VPS9D1Q9Y2B5 RNU6-732P-201ENST00000516033 103 ntBASIC1.13□□□□□ -2.23
VPS9D1Q9Y2B5 AL590095.2-201ENST00000604136 117 ntBASIC1.13□□□□□ -2.23
VPS9D1Q9Y2B5 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.13□□□□□ -2.23
VPS9D1Q9Y2B5 MIR608-201ENST00000384820 100 ntBASIC1.12□□□□□ -2.23
VPS9D1Q9Y2B5 MIR548Q-201ENST00000408404 100 ntBASIC1.11□□□□□ -2.23
VPS9D1Q9Y2B5 Y_RNA.699-201ENST00000516803 93 ntBASIC1.11□□□□□ -2.23
VPS9D1Q9Y2B5 MIR4426-201ENST00000640330 63 ntBASIC1.11□□□□□ -2.23
VPS9D1Q9Y2B5 SNORA27.2-201ENST00000363365 126 ntBASIC1.1□□□□□ -2.23
VPS9D1Q9Y2B5 RNU6-258P-201ENST00000390884 101 ntBASIC1.1□□□□□ -2.23
VPS9D1Q9Y2B5 MIR4452-201ENST00000583004 71 ntBASIC1.1□□□□□ -2.23
VPS9D1Q9Y2B5 MIR6767-201ENST00000637302 66 ntBASIC1.1□□□□□ -2.23
VPS9D1Q9Y2B5 OR2A41P-201ENST00000473586 105 ntBASIC1.09□□□□□ -2.23
VPS9D1Q9Y2B5 MIR4295-201ENST00000585286 85 ntBASIC1.09□□□□□ -2.23
VPS9D1Q9Y2B5 AC096531.1-201ENST00000419107 107 ntBASIC1.08□□□□□ -2.24
VPS9D1Q9Y2B5 RNU6-863P-201ENST00000515989 104 ntBASIC1.08□□□□□ -2.24
VPS9D1Q9Y2B5 RNU1-93P-201ENST00000364704 169 ntBASIC1.07□□□□□ -2.24
VPS9D1Q9Y2B5 RNU6-900P-201ENST00000384498 102 ntBASIC1.07□□□□□ -2.24
VPS9D1Q9Y2B5 AC108740.1-201ENST00000498629 225 ntBASIC1.07□□□□□ -2.24
VPS9D1Q9Y2B5 AC087343.1-201ENST00000477341 475 ntBASIC1.06□□□□□ -2.24
VPS9D1Q9Y2B5 RNU6-110P-201ENST00000384508 104 ntBASIC1.05□□□□□ -2.24
VPS9D1Q9Y2B5 snoU13.18-201ENST00000459483 104 ntBASIC1.05□□□□□ -2.24
VPS9D1Q9Y2B5 RNU6-133P-201ENST00000383989 107 ntBASIC1.04□□□□□ -2.24
VPS9D1Q9Y2B5 MIR520E-201ENST00000384867 87 ntBASIC1.04□□□□□ -2.24
VPS9D1Q9Y2B5 MIR520D-201ENST00000385002 87 ntBASIC1.04□□□□□ -2.24
VPS9D1Q9Y2B5 RPS29P1-201ENST00000465274 159 ntBASIC1.03□□□□□ -2.24
VPS9D1Q9Y2B5 uc_338.17-201ENST00000619633 179 ntBASIC1.03□□□□□ -2.24
VPS9D1Q9Y2B5 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.25
VPS9D1Q9Y2B5 RNU6-361P-201ENST00000364454 107 ntBASIC1.01□□□□□ -2.25
VPS9D1Q9Y2B5 SNORD19-201ENST00000391191 68 ntBASIC1.01□□□□□ -2.25
VPS9D1Q9Y2B5 RNY1P9-201ENST00000532431 109 ntBASIC1.01□□□□□ -2.25
VPS9D1Q9Y2B5 SNORD114-21-201ENST00000606412 72 ntBASIC1.01□□□□□ -2.25
VPS9D1Q9Y2B5 AC103810.9-201ENST00000606688 112 ntBASIC1.01□□□□□ -2.25
VPS9D1Q9Y2B5 MIR124-2-201ENST00000385081 109 ntBASIC1□□□□□ -2.25
VPS9D1Q9Y2B5 MIR5704-201ENST00000584029 77 ntBASIC1□□□□□ -2.25
VPS9D1Q9Y2B5 RNU6-1233P-201ENST00000362922 102 ntBASIC0.99□□□□□ -2.25
VPS9D1Q9Y2B5 RNU4-38P-201ENST00000364472 129 ntBASIC0.99□□□□□ -2.25
VPS9D1Q9Y2B5 RNU6-455P-201ENST00000384681 107 ntBASIC0.99□□□□□ -2.25
VPS9D1Q9Y2B5 RNA5SP169-201ENST00000517268 117 ntBASIC0.99□□□□□ -2.25
VPS9D1Q9Y2B5 SNORD111B-201ENST00000408587 80 ntBASIC0.98□□□□□ -2.25
VPS9D1Q9Y2B5 RNU6-300P-201ENST00000459080 104 ntBASIC0.98□□□□□ -2.25
VPS9D1Q9Y2B5 MIR6854-201ENST00000614935 69 ntBASIC0.98□□□□□ -2.25
VPS9D1Q9Y2B5 MIR8068-201ENST00000618032 68 ntBASIC0.98□□□□□ -2.25
VPS9D1Q9Y2B5 SNORD44.1-201ENST00000363202 61 ntBASIC0.97□□□□□ -2.25
VPS9D1Q9Y2B5 SNORA42.1-201ENST00000363515 137 ntBASIC0.97□□□□□ -2.25
VPS9D1Q9Y2B5 MIR6734-201ENST00000621166 68 ntBASIC0.97□□□□□ -2.25
VPS9D1Q9Y2B5 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
VPS9D1Q9Y2B5 RNA5SP220-201ENST00000516298 104 ntBASIC0.96□□□□□ -2.26
VPS9D1Q9Y2B5 AC022709.1-201ENST00000615967 87 ntBASIC0.96□□□□□ -2.26
VPS9D1Q9Y2B5 RNU6-42P-201ENST00000384165 107 ntBASIC0.95□□□□□ -2.26
VPS9D1Q9Y2B5 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.95□□□□□ -2.26
VPS9D1Q9Y2B5 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.95□□□□□ -2.26
VPS9D1Q9Y2B5 MIR202-201ENST00000362219 110 ntBASIC0.94□□□□□ -2.26
VPS9D1Q9Y2B5 MIR373-201ENST00000362273 69 ntBASIC0.94□□□□□ -2.26
VPS9D1Q9Y2B5 RNU6-485P-201ENST00000363475 107 ntBASIC0.94□□□□□ -2.26
VPS9D1Q9Y2B5 AC211469.2-201ENST00000605461 205 ntBASIC0.94□□□□□ -2.26
VPS9D1Q9Y2B5 MIR6514-201ENST00000622549 70 ntBASIC0.94□□□□□ -2.26
VPS9D1Q9Y2B5 MIR548J-201ENST00000408833 112 ntBASIC0.93□□□□□ -2.26
VPS9D1Q9Y2B5 RNA5SP436-201ENST00000516020 115 ntBASIC0.93□□□□□ -2.26
VPS9D1Q9Y2B5 RNU6-176P-201ENST00000517196 105 ntBASIC0.93□□□□□ -2.26
VPS9D1Q9Y2B5 MIR6857-201ENST00000613267 93 ntBASIC0.93□□□□□ -2.26
VPS9D1Q9Y2B5 RNA5SP325-201ENST00000363756 130 ntBASIC0.92□□□□□ -2.26
VPS9D1Q9Y2B5 Y_RNA.540-201ENST00000384638 111 ntBASIC0.92□□□□□ -2.26
VPS9D1Q9Y2B5 MIR532-201ENST00000385025 91 ntBASIC0.92□□□□□ -2.26
VPS9D1Q9Y2B5 RNU6-127P-201ENST00000390897 107 ntBASIC0.92□□□□□ -2.26
VPS9D1Q9Y2B5 SNORA17.4-201ENST00000391287 132 ntBASIC0.92□□□□□ -2.26
VPS9D1Q9Y2B5 RPL39P28-201ENST00000465655 155 ntBASIC0.92□□□□□ -2.26
VPS9D1Q9Y2B5 PSMC1P5-201ENST00000512850 177 ntBASIC0.91□□□□□ -2.26
VPS9D1Q9Y2B5 MIR151B-201ENST00000584249 96 ntBASIC0.91□□□□□ -2.26
VPS9D1Q9Y2B5 MIR6788-201ENST00000618842 66 ntBASIC0.91□□□□□ -2.26
VPS9D1Q9Y2B5 RNU6-901P-201ENST00000384593 106 ntBASIC0.9□□□□□ -2.27
VPS9D1Q9Y2B5 CR383656.4-201ENST00000546909 122 ntBASIC0.9□□□□□ -2.27
VPS9D1Q9Y2B5 MIR3973-201ENST00000579824 107 ntBASIC0.9□□□□□ -2.27
VPS9D1Q9Y2B5 RNY3P8-201ENST00000411366 126 ntBASIC0.89□□□□□ -2.27
VPS9D1Q9Y2B5 PVT1_3.1-201ENST00000620853 95 ntBASIC0.89□□□□□ -2.27
VPS9D1Q9Y2B5 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
VPS9D1Q9Y2B5 MIR6515-201ENST00000619843 57 ntBASIC0.88□□□□□ -2.27
VPS9D1Q9Y2B5 MIR4698-201ENST00000577795 80 ntBASIC0.87□□□□□ -2.27
VPS9D1Q9Y2B5 SNORD114-2-201ENST00000363953 78 ntBASIC0.86□□□□□ -2.27
VPS9D1Q9Y2B5 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.86□□□□□ -2.27
VPS9D1Q9Y2B5 MIR148A-201ENST00000362215 68 ntBASIC0.85□□□□□ -2.27
VPS9D1Q9Y2B5 AC114755.3-201ENST00000481111 251 ntBASIC0.85□□□□□ -2.27
VPS9D1Q9Y2B5 RNU6-608P-201ENST00000383927 104 ntBASIC0.84□□□□□ -2.27
VPS9D1Q9Y2B5 MIR643-201ENST00000385267 97 ntBASIC0.84□□□□□ -2.27
VPS9D1Q9Y2B5 AP002795.1-201ENST00000534879 84 ntBASIC0.84□□□□□ -2.27
VPS9D1Q9Y2B5 MIR5683-201ENST00000636514 76 ntBASIC0.84□□□□□ -2.27
VPS9D1Q9Y2B5 MIR103A1-201ENST00000362165 78 ntBASIC0.83□□□□□ -2.28
VPS9D1Q9Y2B5 SNORD56B-201ENST00000384713 71 ntBASIC0.83□□□□□ -2.28
VPS9D1Q9Y2B5 RNA5SP163-201ENST00000410304 99 ntBASIC0.83□□□□□ -2.28
VPS9D1Q9Y2B5 RNU6-351P-201ENST00000516097 100 ntBASIC0.83□□□□□ -2.28
VPS9D1Q9Y2B5 RNU6-180P-201ENST00000516697 61 ntBASIC0.82□□□□□ -2.28
VPS9D1Q9Y2B5 RNA5SP480-201ENST00000516840 109 ntBASIC0.82□□□□□ -2.28
VPS9D1Q9Y2B5 MIR5000-201ENST00000577717 103 ntBASIC0.82□□□□□ -2.28
VPS9D1Q9Y2B5 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.82□□□□□ -2.28
VPS9D1Q9Y2B5 SNORD60-201ENST00000383903 83 ntBASIC0.8□□□□□ -2.28
VPS9D1Q9Y2B5 RNU6-815P-201ENST00000384080 113 ntBASIC0.8□□□□□ -2.28
VPS9D1Q9Y2B5 MIR146A-201ENST00000385201 99 ntBASIC0.8□□□□□ -2.28
VPS9D1Q9Y2B5 AL353691.2-201ENST00000443795 59 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms