Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MIR224-201ENST00000384889 81 ntBASIC-1.15□□□□□ -2.59
CHMP1AQ9HD42 SNORD64-201ENST00000386683 67 ntBASIC-1.15□□□□□ -2.59
CHMP1AQ9HD42 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.15□□□□□ -2.59
CHMP1AQ9HD42 MIR494-201ENST00000349529 81 ntBASIC-1.16□□□□□ -2.6
CHMP1AQ9HD42 SNORD115-22-201ENST00000364456 82 ntBASIC-1.16□□□□□ -2.6
CHMP1AQ9HD42 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.16□□□□□ -2.6
CHMP1AQ9HD42 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.16□□□□□ -2.6
CHMP1AQ9HD42 RNU7-174P-201ENST00000516248 59 ntBASIC-1.16□□□□□ -2.6
CHMP1AQ9HD42 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.16□□□□□ -2.6
CHMP1AQ9HD42 RNU6-294P-201ENST00000364999 102 ntBASIC-1.17□□□□□ -2.6
CHMP1AQ9HD42 MT-TQ-201ENST00000387372 72 ntBASIC-1.17□□□□□ -2.6
CHMP1AQ9HD42 RNU6-758P-201ENST00000516292 89 ntBASIC-1.17□□□□□ -2.6
CHMP1AQ9HD42 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.18□□□□□ -2.6
CHMP1AQ9HD42 MIR450A2-201ENST00000385022 100 ntBASIC-1.18□□□□□ -2.6
CHMP1AQ9HD42 MIR664A-201ENST00000626086 82 ntBASIC-1.18□□□□□ -2.6
CHMP1AQ9HD42 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.19□□□□□ -2.6
CHMP1AQ9HD42 RNU6-246P-201ENST00000384702 107 ntBASIC-1.19□□□□□ -2.6
CHMP1AQ9HD42 MIR5582-201ENST00000579697 68 ntBASIC-1.19□□□□□ -2.6
CHMP1AQ9HD42 MIR4712-201ENST00000583750 82 ntBASIC-1.19□□□□□ -2.6
CHMP1AQ9HD42 MIR1245B-201ENST00000636115 69 ntBASIC-1.19□□□□□ -2.6
CHMP1AQ9HD42 MIR196A1-201ENST00000388006 70 ntBASIC-1.2□□□□□ -2.6
CHMP1AQ9HD42 SNORA26.4-201ENST00000391188 123 ntBASIC-1.2□□□□□ -2.6
CHMP1AQ9HD42 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.21□□□□□ -2.6
CHMP1AQ9HD42 AL500527.2-201ENST00000454105 95 ntBASIC-1.21□□□□□ -2.6
CHMP1AQ9HD42 SCARNA18B-201ENST00000458806 135 ntBASIC-1.21□□□□□ -2.6
CHMP1AQ9HD42 MIR8053-201ENST00000613344 75 ntBASIC-1.21□□□□□ -2.6
CHMP1AQ9HD42 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.22□□□□□ -2.6
CHMP1AQ9HD42 SNORD115-33-201ENST00000363723 82 ntBASIC-1.22□□□□□ -2.6
CHMP1AQ9HD42 Y_RNA.681-201ENST00000516445 113 ntBASIC-1.22□□□□□ -2.6
CHMP1AQ9HD42 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.22□□□□□ -2.6
CHMP1AQ9HD42 MIR382-201ENST00000637119 76 ntBASIC-1.22□□□□□ -2.6
CHMP1AQ9HD42 SNORD113.1-201ENST00000363280 73 ntBASIC-1.23□□□□□ -2.61
CHMP1AQ9HD42 RNA5SP368-201ENST00000364298 116 ntBASIC-1.23□□□□□ -2.61
CHMP1AQ9HD42 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.23□□□□□ -2.61
CHMP1AQ9HD42 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.23□□□□□ -2.61
CHMP1AQ9HD42 RNU6-242P-201ENST00000384359 107 ntBASIC-1.23□□□□□ -2.61
CHMP1AQ9HD42 SNORD63.1-201ENST00000516178 80 ntBASIC-1.23□□□□□ -2.61
CHMP1AQ9HD42 U7.5-201ENST00000517224 61 ntBASIC-1.24□□□□□ -2.61
CHMP1AQ9HD42 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.25□□□□□ -2.61
CHMP1AQ9HD42 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.25□□□□□ -2.61
CHMP1AQ9HD42 SNORD95.1-201ENST00000364099 68 ntBASIC-1.25□□□□□ -2.61
CHMP1AQ9HD42 SNORD45A-201ENST00000384512 84 ntBASIC-1.25□□□□□ -2.61
CHMP1AQ9HD42 Z95118.1-201ENST00000421372 247 ntBASIC-1.25□□□□□ -2.61
CHMP1AQ9HD42 MTND4LP1-201ENST00000446263 157 ntBASIC-1.25□□□□□ -2.61
CHMP1AQ9HD42 RNU7-88P-201ENST00000458752 63 ntBASIC-1.25□□□□□ -2.61
CHMP1AQ9HD42 RNU6-587P-201ENST00000391282 106 ntBASIC-1.26□□□□□ -2.61
CHMP1AQ9HD42 RNU4-63P-201ENST00000411313 118 ntBASIC-1.26□□□□□ -2.61
CHMP1AQ9HD42 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.26□□□□□ -2.61
CHMP1AQ9HD42 MIR4666B-201ENST00000578142 81 ntBASIC-1.26□□□□□ -2.61
CHMP1AQ9HD42 RNU6-698P-201ENST00000363523 107 ntBASIC-1.27□□□□□ -2.61
CHMP1AQ9HD42 RNU6-34P-201ENST00000364874 107 ntBASIC-1.27□□□□□ -2.61
CHMP1AQ9HD42 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.27□□□□□ -2.61
CHMP1AQ9HD42 RNU6-732P-201ENST00000516033 103 ntBASIC-1.27□□□□□ -2.61
CHMP1AQ9HD42 U4.4-201ENST00000620626 117 ntBASIC-1.27□□□□□ -2.61
CHMP1AQ9HD42 RNU6-668P-201ENST00000364180 107 ntBASIC-1.29□□□□□ -2.62
CHMP1AQ9HD42 RNU6-787P-201ENST00000384032 107 ntBASIC-1.29□□□□□ -2.62
CHMP1AQ9HD42 RNU6-820P-201ENST00000384273 107 ntBASIC-1.29□□□□□ -2.62
CHMP1AQ9HD42 SNORD83B-201ENST00000386745 93 ntBASIC-1.29□□□□□ -2.62
CHMP1AQ9HD42 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.3□□□□□ -2.62
CHMP1AQ9HD42 RNU6-458P-201ENST00000384179 107 ntBASIC-1.3□□□□□ -2.62
CHMP1AQ9HD42 snoU83B.1-201ENST00000517136 88 ntBASIC-1.3□□□□□ -2.62
CHMP1AQ9HD42 MIR548V-201ENST00000584165 80 ntBASIC-1.3□□□□□ -2.62
CHMP1AQ9HD42 U6.58-201ENST00000613107 107 ntBASIC-1.3□□□□□ -2.62
CHMP1AQ9HD42 RNA5SP215-201ENST00000363440 122 ntBASIC-1.31□□□□□ -2.62
CHMP1AQ9HD42 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.31□□□□□ -2.62
CHMP1AQ9HD42 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.31□□□□□ -2.62
CHMP1AQ9HD42 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.31□□□□□ -2.62
CHMP1AQ9HD42 AC062037.1-201ENST00000605302 128 ntBASIC-1.31□□□□□ -2.62
CHMP1AQ9HD42 AL353691.2-201ENST00000443795 59 ntBASIC-1.32□□□□□ -2.62
CHMP1AQ9HD42 RNU6-70P-201ENST00000516438 60 ntBASIC-1.32□□□□□ -2.62
CHMP1AQ9HD42 MIR3681-201ENST00000580089 72 ntBASIC-1.32□□□□□ -2.62
CHMP1AQ9HD42 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.32□□□□□ -2.62
CHMP1AQ9HD42 RNU6-1298P-201ENST00000362456 101 ntBASIC-1.33□□□□□ -2.62
CHMP1AQ9HD42 MIR527-201ENST00000385244 85 ntBASIC-1.33□□□□□ -2.62
CHMP1AQ9HD42 SNORD19-201ENST00000391191 68 ntBASIC-1.33□□□□□ -2.62
CHMP1AQ9HD42 MIR1265-201ENST00000408444 86 ntBASIC-1.33□□□□□ -2.62
CHMP1AQ9HD42 MIR630-201ENST00000384957 97 ntBASIC-1.34□□□□□ -2.62
CHMP1AQ9HD42 MIR4499-201ENST00000584834 69 ntBASIC-1.34□□□□□ -2.62
CHMP1AQ9HD42 uc_338.19-201ENST00000616808 99 ntBASIC-1.34□□□□□ -2.62
CHMP1AQ9HD42 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.35□□□□□ -2.63
CHMP1AQ9HD42 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.35□□□□□ -2.63
CHMP1AQ9HD42 RNU6-35P-201ENST00000384530 107 ntBASIC-1.36□□□□□ -2.63
CHMP1AQ9HD42 AP002795.1-201ENST00000534879 84 ntBASIC-1.36□□□□□ -2.63
CHMP1AQ9HD42 MIR3134-201ENST00000579433 74 ntBASIC-1.36□□□□□ -2.63
CHMP1AQ9HD42 Y_RNA.68-201ENST00000362881 102 ntBASIC-1.37□□□□□ -2.63
CHMP1AQ9HD42 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.37□□□□□ -2.63
CHMP1AQ9HD42 MIR154-201ENST00000385243 84 ntBASIC-1.37□□□□□ -2.63
CHMP1AQ9HD42 RNA5SP170-201ENST00000517150 101 ntBASIC-1.37□□□□□ -2.63
CHMP1AQ9HD42 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.38□□□□□ -2.63
CHMP1AQ9HD42 RNA5SP25-201ENST00000410815 110 ntBASIC-1.38□□□□□ -2.63
CHMP1AQ9HD42 SNORD116-24-201ENST00000384549 92 ntBASIC-1.39□□□□□ -2.63
CHMP1AQ9HD42 MIR429-201ENST00000362106 83 ntBASIC-1.4□□□□□ -2.63
CHMP1AQ9HD42 SNORD115-31-201ENST00000365318 82 ntBASIC-1.4□□□□□ -2.63
CHMP1AQ9HD42 RNU6-696P-201ENST00000390834 107 ntBASIC-1.4□□□□□ -2.63
CHMP1AQ9HD42 SNORD113-2-201ENST00000391082 72 ntBASIC-1.4□□□□□ -2.63
CHMP1AQ9HD42 MIR5683-201ENST00000636514 76 ntBASIC-1.4□□□□□ -2.63
CHMP1AQ9HD42 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.41□□□□□ -2.64
CHMP1AQ9HD42 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.41□□□□□ -2.64
CHMP1AQ9HD42 RNU6-895P-201ENST00000384125 103 ntBASIC-1.42□□□□□ -2.64
CHMP1AQ9HD42 MIR29B1-201ENST00000385015 81 ntBASIC-1.42□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms