Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 Y_RNA.375-201ENST00000365625 101 ntBASIC0.06□□□□□ -2.4
NKX2-4Q9H2Z4 RNA5SP470-201ENST00000516463 106 ntBASIC0.06□□□□□ -2.4
NKX2-4Q9H2Z4 MIR4493-201ENST00000584016 73 ntBASIC0.06□□□□□ -2.4
NKX2-4Q9H2Z4 RNU6-929P-201ENST00000384429 107 ntBASIC0.05□□□□□ -2.4
NKX2-4Q9H2Z4 RNU6-800P-201ENST00000384473 103 ntBASIC0.05□□□□□ -2.4
NKX2-4Q9H2Z4 MIR4290-201ENST00000583807 95 ntBASIC0.05□□□□□ -2.4
NKX2-4Q9H2Z4 AP001180.6-201ENST00000584918 159 ntBASIC0.05□□□□□ -2.4
NKX2-4Q9H2Z4 AC005520.4-201ENST00000604337 90 ntBASIC0.05□□□□□ -2.4
NKX2-4Q9H2Z4 RNA5SP331-201ENST00000364986 107 ntBASIC0.04□□□□□ -2.4
NKX2-4Q9H2Z4 RNU6-900P-201ENST00000384498 102 ntBASIC0.04□□□□□ -2.4
NKX2-4Q9H2Z4 RNU7-174P-201ENST00000516248 59 ntBASIC0.04□□□□□ -2.4
NKX2-4Q9H2Z4 RNU6-542P-201ENST00000516405 103 ntBASIC0.04□□□□□ -2.4
NKX2-4Q9H2Z4 MIR4667-201ENST00000578933 66 ntBASIC0.04□□□□□ -2.4
NKX2-4Q9H2Z4 MIR655-201ENST00000362159 97 ntBASIC0.03□□□□□ -2.4
NKX2-4Q9H2Z4 SNORD114-15-201ENST00000364687 72 ntBASIC0.03□□□□□ -2.4
NKX2-4Q9H2Z4 RNU6-1133P-201ENST00000410963 100 ntBASIC0.03□□□□□ -2.4
NKX2-4Q9H2Z4 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.03□□□□□ -2.4
NKX2-4Q9H2Z4 RNU6-46P-201ENST00000383860 107 ntBASIC0.02□□□□□ -2.41
NKX2-4Q9H2Z4 AC244250.2-201ENST00000418731 148 ntBASIC0.02□□□□□ -2.41
NKX2-4Q9H2Z4 AC104692.1-201ENST00000472406 90 ntBASIC0.02□□□□□ -2.41
NKX2-4Q9H2Z4 RNU6-698P-201ENST00000363523 107 ntBASIC0.01□□□□□ -2.41
NKX2-4Q9H2Z4 RNU6-34P-201ENST00000364874 107 ntBASIC0.01□□□□□ -2.41
NKX2-4Q9H2Z4 MIR9-2-201ENST00000384838 87 ntBASIC0.01□□□□□ -2.41
NKX2-4Q9H2Z4 MIR604-201ENST00000384880 94 ntBASIC0.01□□□□□ -2.41
NKX2-4Q9H2Z4 MIR519A2-201ENST00000384990 87 ntBASIC0.01□□□□□ -2.41
NKX2-4Q9H2Z4 RNU7-55P-201ENST00000459426 62 ntBASIC0.01□□□□□ -2.41
NKX2-4Q9H2Z4 RNU7-154P-201ENST00000516194 62 ntBASIC0.01□□□□□ -2.41
NKX2-4Q9H2Z4 uc_338.36-201ENST00000622331 158 ntBASIC0.01□□□□□ -2.41
NKX2-4Q9H2Z4 MIR4432-201ENST00000581823 84 ntBASIC0□□□□□ -2.41
NKX2-4Q9H2Z4 AL391099.1-201ENST00000624635 187 ntBASIC0□□□□□ -2.41
NKX2-4Q9H2Z4 SNORD115-23-201ENST00000364461 82 ntBASIC-0.01□□□□□ -2.41
NKX2-4Q9H2Z4 MIR630-201ENST00000384957 97 ntBASIC-0.01□□□□□ -2.41
NKX2-4Q9H2Z4 AC108676.2-201ENST00000605225 163 ntBASIC-0.01□□□□□ -2.41
NKX2-4Q9H2Z4 SNORA32.1-201ENST00000364514 115 ntBASIC-0.02□□□□□ -2.41
NKX2-4Q9H2Z4 RNU6-973P-201ENST00000364690 107 ntBASIC-0.02□□□□□ -2.41
NKX2-4Q9H2Z4 RNU6-590P-201ENST00000365039 107 ntBASIC-0.02□□□□□ -2.41
NKX2-4Q9H2Z4 RNU6-901P-201ENST00000384593 106 ntBASIC-0.02□□□□□ -2.41
NKX2-4Q9H2Z4 SNORD113-2-201ENST00000391082 72 ntBASIC-0.02□□□□□ -2.41
NKX2-4Q9H2Z4 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.03□□□□□ -2.41
NKX2-4Q9H2Z4 SNORD49B-201ENST00000365172 72 ntBASIC-0.03□□□□□ -2.41
NKX2-4Q9H2Z4 AC139453.2-201ENST00000487255 133 ntBASIC-0.03□□□□□ -2.41
NKX2-4Q9H2Z4 AL353803.5-201ENST00000599815 141 ntBASIC-0.03□□□□□ -2.41
NKX2-4Q9H2Z4 MIR1295B-201ENST00000636144 60 ntBASIC-0.04□□□□□ -2.42
NKX2-4Q9H2Z4 MIR409-201ENST00000362237 79 ntBASIC-0.05□□□□□ -2.42
NKX2-4Q9H2Z4 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
NKX2-4Q9H2Z4 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.05□□□□□ -2.42
NKX2-4Q9H2Z4 AC103706.3-201ENST00000636297 85 ntBASIC-0.05□□□□□ -2.42
NKX2-4Q9H2Z4 Y_RNA.386-201ENST00000383913 105 ntBASIC-0.06□□□□□ -2.42
NKX2-4Q9H2Z4 RNA5SP67-201ENST00000516422 131 ntBASIC-0.06□□□□□ -2.42
NKX2-4Q9H2Z4 MIR4511-201ENST00000582784 87 ntBASIC-0.06□□□□□ -2.42
NKX2-4Q9H2Z4 AL590491.3-201ENST00000610731 82 ntBASIC-0.06□□□□□ -2.42
NKX2-4Q9H2Z4 U4.4-201ENST00000620626 117 ntBASIC-0.06□□□□□ -2.42
NKX2-4Q9H2Z4 SNORD95.1-201ENST00000364099 68 ntBASIC-0.07□□□□□ -2.42
NKX2-4Q9H2Z4 SNORD56B-201ENST00000384713 71 ntBASIC-0.07□□□□□ -2.42
NKX2-4Q9H2Z4 MIR214-201ENST00000385214 110 ntBASIC-0.07□□□□□ -2.42
NKX2-4Q9H2Z4 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.07□□□□□ -2.42
NKX2-4Q9H2Z4 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.07□□□□□ -2.42
NKX2-4Q9H2Z4 MIR4280-201ENST00000582178 76 ntBASIC-0.07□□□□□ -2.42
NKX2-4Q9H2Z4 MIR8068-201ENST00000618032 68 ntBASIC-0.07□□□□□ -2.42
NKX2-4Q9H2Z4 MIR101-1-201ENST00000362265 75 ntBASIC-0.08□□□□□ -2.42
NKX2-4Q9H2Z4 AC096531.1-201ENST00000419107 107 ntBASIC-0.08□□□□□ -2.42
NKX2-4Q9H2Z4 MIR548AG1-201ENST00000579932 66 ntBASIC-0.08□□□□□ -2.42
NKX2-4Q9H2Z4 MIR5704-201ENST00000584029 77 ntBASIC-0.08□□□□□ -2.42
NKX2-4Q9H2Z4 MIR4436A-201ENST00000585278 85 ntBASIC-0.08□□□□□ -2.42
NKX2-4Q9H2Z4 SNORD114-12-201ENST00000365400 75 ntBASIC-0.09□□□□□ -2.42
NKX2-4Q9H2Z4 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.09□□□□□ -2.42
NKX2-4Q9H2Z4 RNA5SP169-201ENST00000517268 117 ntBASIC-0.09□□□□□ -2.42
NKX2-4Q9H2Z4 MIR3681-201ENST00000580089 72 ntBASIC-0.09□□□□□ -2.42
NKX2-4Q9H2Z4 SNORA18.1-201ENST00000363418 128 ntBASIC-0.1□□□□□ -2.43
NKX2-4Q9H2Z4 SNORD114-11-201ENST00000363738 75 ntBASIC-0.1□□□□□ -2.43
NKX2-4Q9H2Z4 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.1□□□□□ -2.43
NKX2-4Q9H2Z4 SNORA62.4-201ENST00000365504 151 ntBASIC-0.1□□□□□ -2.43
NKX2-4Q9H2Z4 RNU6-471P-201ENST00000383944 106 ntBASIC-0.1□□□□□ -2.43
NKX2-4Q9H2Z4 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.11□□□□□ -2.43
NKX2-4Q9H2Z4 MIR196A2-201ENST00000385189 110 ntBASIC-0.11□□□□□ -2.43
NKX2-4Q9H2Z4 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-0.11□□□□□ -2.43
NKX2-4Q9H2Z4 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.11□□□□□ -2.43
NKX2-4Q9H2Z4 SNORD4A-201ENST00000459174 72 ntBASIC-0.11□□□□□ -2.43
NKX2-4Q9H2Z4 AC114755.3-201ENST00000481111 251 ntBASIC-0.11□□□□□ -2.43
NKX2-4Q9H2Z4 MIR4464-201ENST00000580818 92 ntBASIC-0.11□□□□□ -2.43
NKX2-4Q9H2Z4 MIR4645-201ENST00000583158 77 ntBASIC-0.11□□□□□ -2.43
NKX2-4Q9H2Z4 MIR4263-201ENST00000584745 83 ntBASIC-0.11□□□□□ -2.43
NKX2-4Q9H2Z4 Y_RNA.340-201ENST00000365330 92 ntBASIC-0.12□□□□□ -2.43
NKX2-4Q9H2Z4 RNA5SP300-201ENST00000391197 107 ntBASIC-0.12□□□□□ -2.43
NKX2-4Q9H2Z4 AC125388.1-201ENST00000459631 156 ntBASIC-0.12□□□□□ -2.43
NKX2-4Q9H2Z4 RNU6-92P-201ENST00000605893 104 ntBASIC-0.12□□□□□ -2.43
NKX2-4Q9H2Z4 MIR8064-201ENST00000612863 90 ntBASIC-0.12□□□□□ -2.43
NKX2-4Q9H2Z4 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.13□□□□□ -2.43
NKX2-4Q9H2Z4 MIR527-201ENST00000385244 85 ntBASIC-0.13□□□□□ -2.43
NKX2-4Q9H2Z4 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.13□□□□□ -2.43
NKX2-4Q9H2Z4 SNORD75.1-201ENST00000408373 60 ntBASIC-0.13□□□□□ -2.43
NKX2-4Q9H2Z4 RNA5SP266-201ENST00000410273 108 ntBASIC-0.13□□□□□ -2.43
NKX2-4Q9H2Z4 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.13□□□□□ -2.43
NKX2-4Q9H2Z4 AL445193.1-201ENST00000441183 141 ntBASIC-0.13□□□□□ -2.43
NKX2-4Q9H2Z4 SNORD38.3-201ENST00000516599 73 ntBASIC-0.13□□□□□ -2.43
NKX2-4Q9H2Z4 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.14□□□□□ -2.43
NKX2-4Q9H2Z4 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.14□□□□□ -2.43
NKX2-4Q9H2Z4 MIR3666-201ENST00000607845 111 ntBASIC-0.14□□□□□ -2.43
NKX2-4Q9H2Z4 SNORD114-28-201ENST00000363610 72 ntBASIC-0.15□□□□□ -2.43
NKX2-4Q9H2Z4 RNA5SP275-201ENST00000363936 118 ntBASIC-0.15□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms