Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.13□□□□□ -2.23
NPAS3Q8IXF0 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC1.12□□□□□ -2.23
NPAS3Q8IXF0 RNU6-485P-201ENST00000363475 107 ntBASIC1.12□□□□□ -2.23
NPAS3Q8IXF0 RNU6-133P-201ENST00000383989 107 ntBASIC1.12□□□□□ -2.23
NPAS3Q8IXF0 MIR760-201ENST00000390220 80 ntBASIC1.12□□□□□ -2.23
NPAS3Q8IXF0 RNU7-129P-201ENST00000516128 62 ntBASIC1.12□□□□□ -2.23
NPAS3Q8IXF0 RNA5SP404-201ENST00000517118 132 ntBASIC1.12□□□□□ -2.23
NPAS3Q8IXF0 MIR499B-201ENST00000636498 73 ntBASIC1.12□□□□□ -2.23
NPAS3Q8IXF0 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.11□□□□□ -2.23
NPAS3Q8IXF0 MIR1285-1-201ENST00000408593 84 ntBASIC1.11□□□□□ -2.23
NPAS3Q8IXF0 RNU6-1133P-201ENST00000410963 100 ntBASIC1.11□□□□□ -2.23
NPAS3Q8IXF0 MIR3925-201ENST00000584674 77 ntBASIC1.11□□□□□ -2.23
NPAS3Q8IXF0 Y_RNA.699-201ENST00000516803 93 ntBASIC1.1□□□□□ -2.23
NPAS3Q8IXF0 MIR6755-201ENST00000619993 66 ntBASIC1.1□□□□□ -2.23
NPAS3Q8IXF0 AL391099.1-201ENST00000624635 187 ntBASIC1.1□□□□□ -2.23
NPAS3Q8IXF0 MIR373-201ENST00000362273 69 ntBASIC1.09□□□□□ -2.23
NPAS3Q8IXF0 SNORD118-201ENST00000363593 134 ntBASIC1.09□□□□□ -2.23
NPAS3Q8IXF0 MIR520D-201ENST00000385002 87 ntBASIC1.09□□□□□ -2.23
NPAS3Q8IXF0 MIR140-201ENST00000385282 100 ntBASIC1.09□□□□□ -2.23
NPAS3Q8IXF0 RNU6-939P-201ENST00000384634 107 ntBASIC1.08□□□□□ -2.24
NPAS3Q8IXF0 Y_RNA.613-201ENST00000410726 97 ntBASIC1.08□□□□□ -2.24
NPAS3Q8IXF0 RNU6-732P-201ENST00000516033 103 ntBASIC1.08□□□□□ -2.24
NPAS3Q8IXF0 AL353765.1-201ENST00000605514 183 ntBASIC1.08□□□□□ -2.24
NPAS3Q8IXF0 SNORD114-21-201ENST00000606412 72 ntBASIC1.08□□□□□ -2.24
NPAS3Q8IXF0 Y_RNA.178-201ENST00000363832 102 ntBASIC1.07□□□□□ -2.24
NPAS3Q8IXF0 SNORA40.8-201ENST00000411034 126 ntBASIC1.07□□□□□ -2.24
NPAS3Q8IXF0 AC211469.2-201ENST00000605461 205 ntBASIC1.07□□□□□ -2.24
NPAS3Q8IXF0 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
NPAS3Q8IXF0 MIR202-201ENST00000362219 110 ntBASIC1.06□□□□□ -2.24
NPAS3Q8IXF0 SNORA62.4-201ENST00000365504 151 ntBASIC1.06□□□□□ -2.24
NPAS3Q8IXF0 SNORD71-201ENST00000411292 86 ntBASIC1.06□□□□□ -2.24
NPAS3Q8IXF0 SCARNA11.2-201ENST00000517183 154 ntBASIC1.06□□□□□ -2.24
NPAS3Q8IXF0 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.05□□□□□ -2.24
NPAS3Q8IXF0 RNU4-38P-201ENST00000364472 129 ntBASIC1.05□□□□□ -2.24
NPAS3Q8IXF0 MIR5704-201ENST00000584029 77 ntBASIC1.05□□□□□ -2.24
NPAS3Q8IXF0 RNU1-124P-201ENST00000363861 145 ntBASIC1.04□□□□□ -2.24
NPAS3Q8IXF0 RNU6-300P-201ENST00000459080 104 ntBASIC1.04□□□□□ -2.24
NPAS3Q8IXF0 RN7SL793P-201ENST00000583259 296 ntBASIC1.04□□□□□ -2.24
NPAS3Q8IXF0 AC104408.1-201ENST00000605241 170 ntBASIC1.04□□□□□ -2.24
NPAS3Q8IXF0 SNORA27.2-201ENST00000363365 126 ntBASIC1.03□□□□□ -2.24
NPAS3Q8IXF0 MIR124-2-201ENST00000385081 109 ntBASIC1.03□□□□□ -2.24
NPAS3Q8IXF0 RNY3P8-201ENST00000411366 126 ntBASIC1.03□□□□□ -2.24
NPAS3Q8IXF0 MIR3973-201ENST00000579824 107 ntBASIC1.03□□□□□ -2.24
NPAS3Q8IXF0 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC1.03□□□□□ -2.24
NPAS3Q8IXF0 MIR532-201ENST00000385025 91 ntBASIC1.02□□□□□ -2.25
NPAS3Q8IXF0 SNORD19-201ENST00000391191 68 ntBASIC1.02□□□□□ -2.25
NPAS3Q8IXF0 MIR876-201ENST00000401147 81 ntBASIC1.02□□□□□ -2.25
NPAS3Q8IXF0 RNA5SP169-201ENST00000517268 117 ntBASIC1.02□□□□□ -2.25
NPAS3Q8IXF0 MIR8068-201ENST00000618032 68 ntBASIC1.02□□□□□ -2.25
NPAS3Q8IXF0 RNA5SP98-201ENST00000363158 137 ntBASIC1.01□□□□□ -2.25
NPAS3Q8IXF0 RNA5SP128-201ENST00000365305 116 ntBASIC1.01□□□□□ -2.25
NPAS3Q8IXF0 MIR216A-201ENST00000385063 110 ntBASIC1.01□□□□□ -2.25
NPAS3Q8IXF0 MIR518A1-201ENST00000385068 85 ntBASIC1.01□□□□□ -2.25
NPAS3Q8IXF0 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.01□□□□□ -2.25
NPAS3Q8IXF0 RNY1P9-201ENST00000532431 109 ntBASIC1.01□□□□□ -2.25
NPAS3Q8IXF0 MIR5000-201ENST00000577717 103 ntBASIC1.01□□□□□ -2.25
NPAS3Q8IXF0 MIR106A-201ENST00000384870 81 ntBASIC1□□□□□ -2.25
NPAS3Q8IXF0 OR2A41P-201ENST00000473586 105 ntBASIC1□□□□□ -2.25
NPAS3Q8IXF0 MIR6857-201ENST00000613267 93 ntBASIC1□□□□□ -2.25
NPAS3Q8IXF0 CYP3A137P-201ENST00000562436 69 ntBASIC0.99□□□□□ -2.25
NPAS3Q8IXF0 RNU6-973P-201ENST00000364690 107 ntBASIC0.98□□□□□ -2.25
NPAS3Q8IXF0 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
NPAS3Q8IXF0 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
NPAS3Q8IXF0 AC103810.9-201ENST00000606688 112 ntBASIC0.96□□□□□ -2.26
NPAS3Q8IXF0 RNU6-361P-201ENST00000364454 107 ntBASIC0.95□□□□□ -2.26
NPAS3Q8IXF0 RNU7-55P-201ENST00000459426 62 ntBASIC0.95□□□□□ -2.26
NPAS3Q8IXF0 MIR4698-201ENST00000577795 80 ntBASIC0.95□□□□□ -2.26
NPAS3Q8IXF0 SNORA17.4-201ENST00000391287 132 ntBASIC0.94□□□□□ -2.26
NPAS3Q8IXF0 AC108740.1-201ENST00000498629 225 ntBASIC0.94□□□□□ -2.26
NPAS3Q8IXF0 AP002795.1-201ENST00000534879 84 ntBASIC0.94□□□□□ -2.26
NPAS3Q8IXF0 RNU6-1233P-201ENST00000362922 102 ntBASIC0.93□□□□□ -2.26
NPAS3Q8IXF0 SNORD115.2-201ENST00000391126 59 ntBASIC0.93□□□□□ -2.26
NPAS3Q8IXF0 RNU6-455P-201ENST00000384681 107 ntBASIC0.92□□□□□ -2.26
NPAS3Q8IXF0 AC096531.1-201ENST00000419107 107 ntBASIC0.92□□□□□ -2.26
NPAS3Q8IXF0 MIR6854-201ENST00000614935 69 ntBASIC0.91□□□□□ -2.26
NPAS3Q8IXF0 SNORA42.1-201ENST00000363515 137 ntBASIC0.9□□□□□ -2.27
NPAS3Q8IXF0 RNU6-900P-201ENST00000384498 102 ntBASIC0.9□□□□□ -2.27
NPAS3Q8IXF0 Y_RNA.115-201ENST00000363272 98 ntBASIC0.89□□□□□ -2.27
NPAS3Q8IXF0 MIR193B-201ENST00000384907 83 ntBASIC0.89□□□□□ -2.27
NPAS3Q8IXF0 RNU6-848P-201ENST00000515948 107 ntBASIC0.89□□□□□ -2.27
NPAS3Q8IXF0 RNU6-617P-201ENST00000516147 107 ntBASIC0.89□□□□□ -2.27
NPAS3Q8IXF0 RNU6-473P-201ENST00000516164 107 ntBASIC0.89□□□□□ -2.27
NPAS3Q8IXF0 RNU6-1049P-201ENST00000516414 107 ntBASIC0.89□□□□□ -2.27
NPAS3Q8IXF0 MIR4714-201ENST00000580728 77 ntBASIC0.89□□□□□ -2.27
NPAS3Q8IXF0 RNU6-608P-201ENST00000383927 104 ntBASIC0.88□□□□□ -2.27
NPAS3Q8IXF0 RNU6-901P-201ENST00000384593 106 ntBASIC0.88□□□□□ -2.27
NPAS3Q8IXF0 MIR608-201ENST00000384820 100 ntBASIC0.88□□□□□ -2.27
NPAS3Q8IXF0 MIR1273G-201ENST00000577677 100 ntBASIC0.87□□□□□ -2.27
NPAS3Q8IXF0 MIR6514-201ENST00000622549 70 ntBASIC0.87□□□□□ -2.27
NPAS3Q8IXF0 Y_RNA.68-201ENST00000362881 102 ntBASIC0.86□□□□□ -2.27
NPAS3Q8IXF0 MIR643-201ENST00000385267 97 ntBASIC0.86□□□□□ -2.27
NPAS3Q8IXF0 RPL39P28-201ENST00000465655 155 ntBASIC0.86□□□□□ -2.27
NPAS3Q8IXF0 MIR4661-201ENST00000582720 75 ntBASIC0.86□□□□□ -2.27
NPAS3Q8IXF0 AL590095.2-201ENST00000604136 117 ntBASIC0.85□□□□□ -2.27
NPAS3Q8IXF0 MIR5683-201ENST00000636514 76 ntBASIC0.85□□□□□ -2.27
NPAS3Q8IXF0 Y_RNA.134-201ENST00000363435 105 ntBASIC0.84□□□□□ -2.27
NPAS3Q8IXF0 uc_338.17-201ENST00000619633 179 ntBASIC0.84□□□□□ -2.27
NPAS3Q8IXF0 Y_RNA.382-201ENST00000365672 114 ntBASIC0.83□□□□□ -2.28
NPAS3Q8IXF0 AL445193.1-201ENST00000441183 141 ntBASIC0.83□□□□□ -2.28
NPAS3Q8IXF0 RNA5SP330-201ENST00000517096 96 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 276.1 ms