Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 SNORA75.1-201ENST00000391130 148 ntBASIC0.4□□□□□ -2.34
COL4A3Q01955 RPS29P8-201ENST00000445109 171 ntBASIC0.4□□□□□ -2.34
COL4A3Q01955 RNU6-502P-201ENST00000362419 108 ntBASIC0.4□□□□□ -2.35
COL4A3Q01955 Y_RNA.325-201ENST00000365171 122 ntBASIC0.4□□□□□ -2.35
COL4A3Q01955 MIR106A-201ENST00000384870 81 ntBASIC0.4□□□□□ -2.35
COL4A3Q01955 SNORA49-201ENST00000386157 136 ntBASIC0.4□□□□□ -2.35
COL4A3Q01955 MIR876-201ENST00000401147 81 ntBASIC0.4□□□□□ -2.35
COL4A3Q01955 RNU6-782P-201ENST00000516852 104 ntBASIC0.4□□□□□ -2.35
COL4A3Q01955 uc_338.17-201ENST00000619633 179 ntBASIC0.4□□□□□ -2.35
COL4A3Q01955 AC090625.1-201ENST00000357130 210 ntBASIC0.39□□□□□ -2.35
COL4A3Q01955 Y_RNA.74-201ENST00000362911 99 ntBASIC0.39□□□□□ -2.35
COL4A3Q01955 RNA5SP470-201ENST00000516463 106 ntBASIC0.39□□□□□ -2.35
COL4A3Q01955 RNY1P9-201ENST00000532431 109 ntBASIC0.39□□□□□ -2.35
COL4A3Q01955 MIR3938-201ENST00000582157 103 ntBASIC0.39□□□□□ -2.35
COL4A3Q01955 MIRLET7D-201ENST00000362263 87 ntBASIC0.38□□□□□ -2.35
COL4A3Q01955 SNORD60.1-201ENST00000362451 73 ntBASIC0.38□□□□□ -2.35
COL4A3Q01955 MIR548AX-201ENST00000580117 73 ntBASIC0.38□□□□□ -2.35
COL4A3Q01955 RNU6-518P-201ENST00000516056 96 ntBASIC0.37□□□□□ -2.35
COL4A3Q01955 AC069113.3-201ENST00000521019 150 ntBASIC0.37□□□□□ -2.35
COL4A3Q01955 AP000676.1-201ENST00000533307 52 ntBASIC0.37□□□□□ -2.35
COL4A3Q01955 MIRLET7B-201ENST00000385140 83 ntBASIC0.37□□□□□ -2.35
COL4A3Q01955 MIR1207-201ENST00000408249 87 ntBASIC0.37□□□□□ -2.35
COL4A3Q01955 SNORD115-25-201ENST00000362619 82 ntBASIC0.36□□□□□ -2.35
COL4A3Q01955 MIR633-201ENST00000384821 98 ntBASIC0.36□□□□□ -2.35
COL4A3Q01955 MIR643-201ENST00000385267 97 ntBASIC0.36□□□□□ -2.35
COL4A3Q01955 RNU6-127P-201ENST00000390897 107 ntBASIC0.35□□□□□ -2.35
COL4A3Q01955 RNU6-1327P-201ENST00000365302 105 ntBASIC0.34□□□□□ -2.35
COL4A3Q01955 MTND4LP19-201ENST00000403051 166 ntBASIC0.34□□□□□ -2.35
COL4A3Q01955 RNU6-122P-201ENST00000516818 107 ntBASIC0.34□□□□□ -2.35
COL4A3Q01955 MIR101-1-201ENST00000362265 75 ntBASIC0.33□□□□□ -2.36
COL4A3Q01955 RNU7-154P-201ENST00000516194 62 ntBASIC0.33□□□□□ -2.36
COL4A3Q01955 MIR198-201ENST00000637333 62 ntBASIC0.33□□□□□ -2.36
COL4A3Q01955 RNU6-1079P-201ENST00000362861 110 ntBASIC0.33□□□□□ -2.36
COL4A3Q01955 SNORD114-31-201ENST00000363219 75 ntBASIC0.33□□□□□ -2.36
COL4A3Q01955 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.33□□□□□ -2.36
COL4A3Q01955 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.33□□□□□ -2.36
COL4A3Q01955 MIR4315-1-201ENST00000636800 73 ntBASIC0.33□□□□□ -2.36
COL4A3Q01955 MIR4315-2-201ENST00000640925 73 ntBASIC0.33□□□□□ -2.36
COL4A3Q01955 MIR527-201ENST00000385244 85 ntBASIC0.32□□□□□ -2.36
COL4A3Q01955 MIR892B-201ENST00000401279 77 ntBASIC0.32□□□□□ -2.36
COL4A3Q01955 AC108740.1-201ENST00000498629 225 ntBASIC0.32□□□□□ -2.36
COL4A3Q01955 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.32□□□□□ -2.36
COL4A3Q01955 SNORD114-3-201ENST00000364969 75 ntBASIC0.31□□□□□ -2.36
COL4A3Q01955 SNORA41B-201ENST00000384785 128 ntBASIC0.3□□□□□ -2.36
COL4A3Q01955 snoR1.1-201ENST00000628177 80 ntBASIC0.3□□□□□ -2.36
COL4A3Q01955 Y_RNA.282-201ENST00000364793 102 ntBASIC0.3□□□□□ -2.36
COL4A3Q01955 RNU6-614P-201ENST00000384369 107 ntBASIC0.3□□□□□ -2.36
COL4A3Q01955 RNU6-1246P-201ENST00000391064 107 ntBASIC0.3□□□□□ -2.36
COL4A3Q01955 RNU6-180P-201ENST00000516697 61 ntBASIC0.3□□□□□ -2.36
COL4A3Q01955 U6.59-201ENST00000615686 107 ntBASIC0.3□□□□□ -2.36
COL4A3Q01955 RNU6-829P-201ENST00000363700 112 ntBASIC0.29□□□□□ -2.36
COL4A3Q01955 CR383656.4-201ENST00000546909 122 ntBASIC0.29□□□□□ -2.36
COL4A3Q01955 MIR610-201ENST00000385139 96 ntBASIC0.28□□□□□ -2.36
COL4A3Q01955 RNA5SP163-201ENST00000410304 99 ntBASIC0.28□□□□□ -2.36
COL4A3Q01955 MIR4432-201ENST00000581823 84 ntBASIC0.28□□□□□ -2.36
COL4A3Q01955 AL353803.5-201ENST00000599815 141 ntBASIC0.28□□□□□ -2.36
COL4A3Q01955 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.28□□□□□ -2.36
COL4A3Q01955 MIR6514-201ENST00000622549 70 ntBASIC0.28□□□□□ -2.36
COL4A3Q01955 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
COL4A3Q01955 RNA5SP214-201ENST00000363378 118 ntBASIC0.27□□□□□ -2.37
COL4A3Q01955 MIR593-201ENST00000384856 100 ntBASIC0.27□□□□□ -2.37
COL4A3Q01955 AC079150.2-201ENST00000443733 78 ntBASIC0.27□□□□□ -2.37
COL4A3Q01955 SNORD116-16-201ENST00000384533 92 ntBASIC0.26□□□□□ -2.37
COL4A3Q01955 MIR548H2-201ENST00000408874 88 ntBASIC0.25□□□□□ -2.37
COL4A3Q01955 RNU6-520P-201ENST00000384717 104 ntBASIC0.24□□□□□ -2.37
COL4A3Q01955 MIR548AG1-201ENST00000579932 66 ntBASIC0.24□□□□□ -2.37
COL4A3Q01955 MIR4743-201ENST00000584576 69 ntBASIC0.24□□□□□ -2.37
COL4A3Q01955 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.24□□□□□ -2.37
COL4A3Q01955 AL391099.1-201ENST00000624635 187 ntBASIC0.24□□□□□ -2.37
COL4A3Q01955 RNU6-446P-201ENST00000362827 106 ntBASIC0.24□□□□□ -2.37
COL4A3Q01955 RNU6-900P-201ENST00000384498 102 ntBASIC0.24□□□□□ -2.37
COL4A3Q01955 RNU6-1133P-201ENST00000410963 100 ntBASIC0.24□□□□□ -2.37
COL4A3Q01955 AC104408.1-201ENST00000605241 170 ntBASIC0.24□□□□□ -2.37
COL4A3Q01955 MIR6507-201ENST00000613630 70 ntBASIC0.24□□□□□ -2.37
COL4A3Q01955 MIR429-201ENST00000362106 83 ntBASIC0.23□□□□□ -2.37
COL4A3Q01955 SNORD115-23-201ENST00000364461 82 ntBASIC0.23□□□□□ -2.37
COL4A3Q01955 RNU4-37P-201ENST00000410214 84 ntBASIC0.23□□□□□ -2.37
COL4A3Q01955 RNU7-55P-201ENST00000459426 62 ntBASIC0.23□□□□□ -2.37
COL4A3Q01955 uc_338.36-201ENST00000622331 158 ntBASIC0.23□□□□□ -2.37
COL4A3Q01955 Y_RNA.236-201ENST00000364427 111 ntBASIC0.22□□□□□ -2.37
COL4A3Q01955 SNORD49B-201ENST00000365172 72 ntBASIC0.22□□□□□ -2.37
COL4A3Q01955 RNU6-1184P-201ENST00000384588 108 ntBASIC0.22□□□□□ -2.37
COL4A3Q01955 MIR145-201ENST00000384967 88 ntBASIC0.22□□□□□ -2.37
COL4A3Q01955 RNU7-119P-201ENST00000459279 63 ntBASIC0.22□□□□□ -2.37
COL4A3Q01955 RNU6-987P-201ENST00000384759 104 ntBASIC0.21□□□□□ -2.38
COL4A3Q01955 U4.2-201ENST00000618561 85 ntBASIC0.21□□□□□ -2.38
COL4A3Q01955 SNORD114-9-201ENST00000364370 72 ntBASIC0.21□□□□□ -2.38
COL4A3Q01955 RNU6-455P-201ENST00000384681 107 ntBASIC0.21□□□□□ -2.38
COL4A3Q01955 RNU6-246P-201ENST00000384702 107 ntBASIC0.21□□□□□ -2.38
COL4A3Q01955 RNU7-165P-201ENST00000458864 60 ntBASIC0.21□□□□□ -2.38
COL4A3Q01955 MIR4645-201ENST00000583158 77 ntBASIC0.21□□□□□ -2.38
COL4A3Q01955 SNORA62.4-201ENST00000365504 151 ntBASIC0.2□□□□□ -2.38
COL4A3Q01955 RNU6-46P-201ENST00000383860 107 ntBASIC0.2□□□□□ -2.38
COL4A3Q01955 AC096531.1-201ENST00000419107 107 ntBASIC0.2□□□□□ -2.38
COL4A3Q01955 RNU6-973P-201ENST00000364690 107 ntBASIC0.19□□□□□ -2.38
COL4A3Q01955 RNU6-458P-201ENST00000384179 107 ntBASIC0.19□□□□□ -2.38
COL4A3Q01955 RNU7-159P-201ENST00000459284 62 ntBASIC0.19□□□□□ -2.38
COL4A3Q01955 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
COL4A3Q01955 MIR4768-201ENST00000585270 74 ntBASIC0.19□□□□□ -2.38
COL4A3Q01955 U6.58-201ENST00000613107 107 ntBASIC0.19□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 226.5 ms