Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC104408.1-201ENST00000605241 170 ntBASIC0.25□□□□□ -2.37
MSX2P35548 MIR6507-201ENST00000613630 70 ntBASIC0.25□□□□□ -2.37
MSX2P35548 RNU6-1079P-201ENST00000362861 110 ntBASIC0.24□□□□□ -2.37
MSX2P35548 MIR610-201ENST00000385139 96 ntBASIC0.24□□□□□ -2.37
MSX2P35548 RNA5SP63-201ENST00000391225 112 ntBASIC0.24□□□□□ -2.37
MSX2P35548 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.24□□□□□ -2.37
MSX2P35548 Y_RNA.433-201ENST00000384089 102 ntBASIC0.23□□□□□ -2.37
MSX2P35548 SNORD116-16-201ENST00000384533 92 ntBASIC0.23□□□□□ -2.37
MSX2P35548 MIR593-201ENST00000384856 100 ntBASIC0.23□□□□□ -2.37
MSX2P35548 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.23□□□□□ -2.37
MSX2P35548 MIR3938-201ENST00000582157 103 ntBASIC0.23□□□□□ -2.37
MSX2P35548 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
MSX2P35548 AC023932.2-201ENST00000603176 175 ntBASIC0.23□□□□□ -2.37
MSX2P35548 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.23□□□□□ -2.37
MSX2P35548 RNA5SP214-201ENST00000363378 118 ntBASIC0.22□□□□□ -2.37
MSX2P35548 MIR145-201ENST00000384967 88 ntBASIC0.22□□□□□ -2.37
MSX2P35548 AC079150.2-201ENST00000443733 78 ntBASIC0.22□□□□□ -2.37
MSX2P35548 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.22□□□□□ -2.37
MSX2P35548 RNU6-900P-201ENST00000384498 102 ntBASIC0.21□□□□□ -2.38
MSX2P35548 MIR527-201ENST00000385244 85 ntBASIC0.21□□□□□ -2.38
MSX2P35548 RNU7-165P-201ENST00000458864 60 ntBASIC0.21□□□□□ -2.38
MSX2P35548 MIR4432-201ENST00000581823 84 ntBASIC0.21□□□□□ -2.38
MSX2P35548 RNU6-829P-201ENST00000363700 112 ntBASIC0.2□□□□□ -2.38
MSX2P35548 SNORD114-9-201ENST00000364370 72 ntBASIC0.2□□□□□ -2.38
MSX2P35548 RNU6-446P-201ENST00000362827 106 ntBASIC0.19□□□□□ -2.38
MSX2P35548 RNU6-973P-201ENST00000364690 107 ntBASIC0.19□□□□□ -2.38
MSX2P35548 RNU6-455P-201ENST00000384681 107 ntBASIC0.19□□□□□ -2.38
MSX2P35548 AL391099.1-201ENST00000624635 187 ntBASIC0.19□□□□□ -2.38
MSX2P35548 snoR1.1-201ENST00000628177 80 ntBASIC0.19□□□□□ -2.38
MSX2P35548 RNU7-159P-201ENST00000459284 62 ntBASIC0.18□□□□□ -2.38
MSX2P35548 Y_RNA.698-201ENST00000516798 118 ntBASIC0.18□□□□□ -2.38
MSX2P35548 uc_338.36-201ENST00000622331 158 ntBASIC0.18□□□□□ -2.38
MSX2P35548 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.17□□□□□ -2.38
MSX2P35548 AC244250.2-201ENST00000418731 148 ntBASIC0.17□□□□□ -2.38
MSX2P35548 AC096531.1-201ENST00000419107 107 ntBASIC0.17□□□□□ -2.38
MSX2P35548 MIR4464-201ENST00000580818 92 ntBASIC0.17□□□□□ -2.38
MSX2P35548 MIR6718-201ENST00000616153 80 ntBASIC0.17□□□□□ -2.38
MSX2P35548 SNORD114-5-201ENST00000362928 70 ntBASIC0.16□□□□□ -2.38
MSX2P35548 Y_RNA.109-201ENST00000363215 102 ntBASIC0.16□□□□□ -2.38
MSX2P35548 RNA5SP285-201ENST00000516619 119 ntBASIC0.16□□□□□ -2.38
MSX2P35548 MIR655-201ENST00000362159 97 ntBASIC0.15□□□□□ -2.39
MSX2P35548 RNU6-458P-201ENST00000384179 107 ntBASIC0.15□□□□□ -2.39
MSX2P35548 RNU6-1133P-201ENST00000410963 100 ntBASIC0.15□□□□□ -2.39
MSX2P35548 U6.58-201ENST00000613107 107 ntBASIC0.15□□□□□ -2.39
MSX2P35548 RNU6-35P-201ENST00000384530 107 ntBASIC0.14□□□□□ -2.39
MSX2P35548 RNU6-246P-201ENST00000384702 107 ntBASIC0.14□□□□□ -2.39
MSX2P35548 MIR6888-201ENST00000621977 67 ntBASIC0.14□□□□□ -2.39
MSX2P35548 Y_RNA.236-201ENST00000364427 111 ntBASIC0.13□□□□□ -2.39
MSX2P35548 AC108676.2-201ENST00000605225 163 ntBASIC0.13□□□□□ -2.39
MSX2P35548 SNORA62.4-201ENST00000365504 151 ntBASIC0.12□□□□□ -2.39
MSX2P35548 SNORD56B-201ENST00000384713 71 ntBASIC0.12□□□□□ -2.39
MSX2P35548 MTND4LP19-201ENST00000403051 166 ntBASIC0.12□□□□□ -2.39
MSX2P35548 MIR1295A-201ENST00000408463 79 ntBASIC0.12□□□□□ -2.39
MSX2P35548 RNU6-231P-201ENST00000517122 103 ntBASIC0.12□□□□□ -2.39
MSX2P35548 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.11□□□□□ -2.39
MSX2P35548 SNORD1B-201ENST00000363091 84 ntBASIC0.11□□□□□ -2.39
MSX2P35548 RNU6-929P-201ENST00000384429 107 ntBASIC0.11□□□□□ -2.39
MSX2P35548 MIR5190-201ENST00000581537 80 ntBASIC0.11□□□□□ -2.39
MSX2P35548 MIR5704-201ENST00000584029 77 ntBASIC0.11□□□□□ -2.39
MSX2P35548 AL445584.3-201ENST00000617173 78 ntBASIC0.11□□□□□ -2.39
MSX2P35548 MIR429-201ENST00000362106 83 ntBASIC0.1□□□□□ -2.39
MSX2P35548 RNU6-520P-201ENST00000384717 104 ntBASIC0.09□□□□□ -2.4
MSX2P35548 MIR4290-201ENST00000583807 95 ntBASIC0.09□□□□□ -2.4
MSX2P35548 MIR8068-201ENST00000618032 68 ntBASIC0.09□□□□□ -2.4
MSX2P35548 SNORD113-4-201ENST00000364802 75 ntBASIC0.08□□□□□ -2.4
MSX2P35548 RNU6-46P-201ENST00000383860 107 ntBASIC0.08□□□□□ -2.4
MSX2P35548 MIR329-2-201ENST00000385029 84 ntBASIC0.08□□□□□ -2.4
MSX2P35548 RNU6-598P-201ENST00000364017 105 ntBASIC0.07□□□□□ -2.4
MSX2P35548 RNU7-119P-201ENST00000459279 63 ntBASIC0.07□□□□□ -2.4
MSX2P35548 RNA5SP476-201ENST00000516613 103 ntBASIC0.07□□□□□ -2.4
MSX2P35548 MIR6759-201ENST00000638110 65 ntBASIC0.07□□□□□ -2.4
MSX2P35548 SNORD49B-201ENST00000365172 72 ntBASIC0.06□□□□□ -2.4
MSX2P35548 RNU6-1184P-201ENST00000384588 108 ntBASIC0.06□□□□□ -2.4
MSX2P35548 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.06□□□□□ -2.4
MSX2P35548 RNU6-172P-201ENST00000411000 93 ntBASIC0.06□□□□□ -2.4
MSX2P35548 AC114755.3-201ENST00000481111 251 ntBASIC0.06□□□□□ -2.4
MSX2P35548 MIR7110-201ENST00000612638 86 ntBASIC0.06□□□□□ -2.4
MSX2P35548 MIR6854-201ENST00000614935 69 ntBASIC0.06□□□□□ -2.4
MSX2P35548 SNORD114-16-201ENST00000363044 70 ntBASIC0.05□□□□□ -2.4
MSX2P35548 RNU6-901P-201ENST00000384593 106 ntBASIC0.05□□□□□ -2.4
MSX2P35548 RNU6-614P-201ENST00000384369 107 ntBASIC0.04□□□□□ -2.4
MSX2P35548 SNORA40.16-201ENST00000517238 121 ntBASIC0.04□□□□□ -2.4
MSX2P35548 MIR4667-201ENST00000578933 66 ntBASIC0.04□□□□□ -2.4
MSX2P35548 MIR4280-201ENST00000582178 76 ntBASIC0.04□□□□□ -2.4
MSX2P35548 MIR4768-201ENST00000585270 74 ntBASIC0.04□□□□□ -2.4
MSX2P35548 U6.59-201ENST00000615686 107 ntBASIC0.04□□□□□ -2.4
MSX2P35548 SNORD116.2-201ENST00000391251 93 ntBASIC0.03□□□□□ -2.4
MSX2P35548 U7.5-201ENST00000517224 61 ntBASIC0.03□□□□□ -2.4
MSX2P35548 MIR4636-201ENST00000582271 80 ntBASIC0.03□□□□□ -2.4
MSX2P35548 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.03□□□□□ -2.4
MSX2P35548 MIR371B-201ENST00000638082 66 ntBASIC0.03□□□□□ -2.4
MSX2P35548 HAR1A.1-201ENST00000459583 118 ntBASIC0.02□□□□□ -2.41
MSX2P35548 RNU6-1262P-201ENST00000516217 96 ntBASIC0.02□□□□□ -2.41
MSX2P35548 U2.18-201ENST00000622185 84 ntBASIC0.02□□□□□ -2.41
MSX2P35548 MIR6086-201ENST00000638065 55 ntBASIC0.02□□□□□ -2.41
MSX2P35548 RNU6-696P-201ENST00000390834 107 ntBASIC0.01□□□□□ -2.41
MSX2P35548 AL445193.1-201ENST00000441183 141 ntBASIC0.01□□□□□ -2.41
MSX2P35548 AC104692.1-201ENST00000472406 90 ntBASIC0.01□□□□□ -2.41
MSX2P35548 MIR4802-201ENST00000581881 80 ntBASIC0.01□□□□□ -2.41
MSX2P35548 AL590491.3-201ENST00000610731 82 ntBASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 194.6 ms