Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 MIR5704-201ENST00000584029 77 ntBASIC0.08□□□□□ -2.4
HLA-DOAP06340 MIR655-201ENST00000362159 97 ntBASIC0.07□□□□□ -2.4
HLA-DOAP06340 SNORA41B-201ENST00000384785 128 ntBASIC0.07□□□□□ -2.4
HLA-DOAP06340 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.07□□□□□ -2.4
HLA-DOAP06340 MIR8068-201ENST00000618032 68 ntBASIC0.07□□□□□ -2.4
HLA-DOAP06340 AC103706.3-201ENST00000636297 85 ntBASIC0.07□□□□□ -2.4
HLA-DOAP06340 MIR4432-201ENST00000581823 84 ntBASIC0.06□□□□□ -2.4
HLA-DOAP06340 MIR4743-201ENST00000584576 69 ntBASIC0.06□□□□□ -2.4
HLA-DOAP06340 AL391099.1-201ENST00000624635 187 ntBASIC0.06□□□□□ -2.4
HLA-DOAP06340 RNU6-900P-201ENST00000384498 102 ntBASIC0.05□□□□□ -2.4
HLA-DOAP06340 SNORD56B-201ENST00000384713 71 ntBASIC0.05□□□□□ -2.4
HLA-DOAP06340 snoR1.1-201ENST00000628177 80 ntBASIC0.05□□□□□ -2.4
HLA-DOAP06340 SNORA25.5-201ENST00000363782 126 ntBASIC0.04□□□□□ -2.4
HLA-DOAP06340 RNU6-302P-201ENST00000365249 107 ntBASIC0.04□□□□□ -2.4
HLA-DOAP06340 RNU6-1133P-201ENST00000410963 100 ntBASIC0.04□□□□□ -2.4
HLA-DOAP06340 RNU7-154P-201ENST00000516194 62 ntBASIC0.04□□□□□ -2.4
HLA-DOAP06340 RNA5SP470-201ENST00000516463 106 ntBASIC0.04□□□□□ -2.4
HLA-DOAP06340 MIR5190-201ENST00000581537 80 ntBASIC0.04□□□□□ -2.4
HLA-DOAP06340 RNU6-92P-201ENST00000605893 104 ntBASIC0.04□□□□□ -2.4
HLA-DOAP06340 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.04□□□□□ -2.4
HLA-DOAP06340 AC110620.1-201ENST00000416042 228 ntBASIC0.03□□□□□ -2.4
HLA-DOAP06340 MIR4464-201ENST00000580818 92 ntBASIC0.03□□□□□ -2.4
HLA-DOAP06340 Y_RNA.74-201ENST00000362911 99 ntBASIC0.02□□□□□ -2.41
HLA-DOAP06340 RNU6-973P-201ENST00000364690 107 ntBASIC0.02□□□□□ -2.41
HLA-DOAP06340 Y_RNA.282-201ENST00000364793 102 ntBASIC0.02□□□□□ -2.41
HLA-DOAP06340 Y_RNA.698-201ENST00000516798 118 ntBASIC0.02□□□□□ -2.41
HLA-DOAP06340 MIR4290-201ENST00000583807 95 ntBASIC0.02□□□□□ -2.41
HLA-DOAP06340 MIR4768-201ENST00000585270 74 ntBASIC0.02□□□□□ -2.41
HLA-DOAP06340 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.01□□□□□ -2.41
HLA-DOAP06340 SNORD60.1-201ENST00000362451 73 ntBASIC0.01□□□□□ -2.41
HLA-DOAP06340 MIR527-201ENST00000385244 85 ntBASIC0.01□□□□□ -2.41
HLA-DOAP06340 AL445193.1-201ENST00000441183 141 ntBASIC0.01□□□□□ -2.41
HLA-DOAP06340 MIR6888-201ENST00000621977 67 ntBASIC0.01□□□□□ -2.41
HLA-DOAP06340 Y_RNA.374-201ENST00000365606 101 ntBASIC0□□□□□ -2.41
HLA-DOAP06340 AC096531.1-201ENST00000419107 107 ntBASIC0□□□□□ -2.41
HLA-DOAP06340 SNORD49B-201ENST00000365172 72 ntBASIC-0.01□□□□□ -2.41
HLA-DOAP06340 MIR4667-201ENST00000578933 66 ntBASIC-0.01□□□□□ -2.41
HLA-DOAP06340 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.01□□□□□ -2.41
HLA-DOAP06340 RNU6-901P-201ENST00000384593 106 ntBASIC-0.02□□□□□ -2.41
HLA-DOAP06340 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.03□□□□□ -2.41
HLA-DOAP06340 RNU6-246P-201ENST00000384702 107 ntBASIC-0.04□□□□□ -2.42
HLA-DOAP06340 AC114755.3-201ENST00000481111 251 ntBASIC-0.04□□□□□ -2.42
HLA-DOAP06340 MIR466-201ENST00000580653 84 ntBASIC-0.04□□□□□ -2.42
HLA-DOAP06340 MIR4280-201ENST00000582178 76 ntBASIC-0.04□□□□□ -2.42
HLA-DOAP06340 AC108676.2-201ENST00000605225 163 ntBASIC-0.04□□□□□ -2.42
HLA-DOAP06340 AL445584.3-201ENST00000617173 78 ntBASIC-0.04□□□□□ -2.42
HLA-DOAP06340 RNU6-458P-201ENST00000384179 107 ntBASIC-0.05□□□□□ -2.42
HLA-DOAP06340 U6.58-201ENST00000613107 107 ntBASIC-0.05□□□□□ -2.42
HLA-DOAP06340 SNORD114-12-201ENST00000365400 75 ntBASIC-0.06□□□□□ -2.42
HLA-DOAP06340 RNU6-46P-201ENST00000383860 107 ntBASIC-0.06□□□□□ -2.42
HLA-DOAP06340 RNU6-122P-201ENST00000516818 107 ntBASIC-0.06□□□□□ -2.42
HLA-DOAP06340 MIR6854-201ENST00000614935 69 ntBASIC-0.06□□□□□ -2.42
HLA-DOAP06340 SNORD114-16-201ENST00000363044 70 ntBASIC-0.07□□□□□ -2.42
HLA-DOAP06340 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.07□□□□□ -2.42
HLA-DOAP06340 SNORD116-16-201ENST00000384533 92 ntBASIC-0.07□□□□□ -2.42
HLA-DOAP06340 SNORD38.3-201ENST00000516599 73 ntBASIC-0.07□□□□□ -2.42
HLA-DOAP06340 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.07□□□□□ -2.42
HLA-DOAP06340 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.08□□□□□ -2.42
HLA-DOAP06340 RNU7-88P-201ENST00000458752 63 ntBASIC-0.08□□□□□ -2.42
HLA-DOAP06340 AL590491.3-201ENST00000610731 82 ntBASIC-0.08□□□□□ -2.42
HLA-DOAP06340 MIR371B-201ENST00000638082 66 ntBASIC-0.08□□□□□ -2.42
HLA-DOAP06340 RNU6-1079P-201ENST00000362861 110 ntBASIC-0.09□□□□□ -2.42
HLA-DOAP06340 RNU6-940P-201ENST00000363433 104 ntBASIC-0.09□□□□□ -2.42
HLA-DOAP06340 RNU6-669P-201ENST00000365575 107 ntBASIC-0.09□□□□□ -2.42
HLA-DOAP06340 MIR633-201ENST00000384821 98 ntBASIC-0.09□□□□□ -2.42
HLA-DOAP06340 MIR124-2-201ENST00000385081 109 ntBASIC-0.09□□□□□ -2.42
HLA-DOAP06340 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.1□□□□□ -2.43
HLA-DOAP06340 SNORA62.4-201ENST00000365504 151 ntBASIC-0.11□□□□□ -2.43
HLA-DOAP06340 SNORD1B-201ENST00000363091 84 ntBASIC-0.12□□□□□ -2.43
HLA-DOAP06340 RNU6-598P-201ENST00000364017 105 ntBASIC-0.12□□□□□ -2.43
HLA-DOAP06340 U7.5-201ENST00000517224 61 ntBASIC-0.12□□□□□ -2.43
HLA-DOAP06340 U2.18-201ENST00000622185 84 ntBASIC-0.13□□□□□ -2.43
HLA-DOAP06340 RNU6-446P-201ENST00000362827 106 ntBASIC-0.15□□□□□ -2.43
HLA-DOAP06340 SNORD114-11-201ENST00000363738 75 ntBASIC-0.15□□□□□ -2.43
HLA-DOAP06340 AC104692.1-201ENST00000472406 90 ntBASIC-0.15□□□□□ -2.43
HLA-DOAP06340 RNA5SP285-201ENST00000516619 119 ntBASIC-0.15□□□□□ -2.43
HLA-DOAP06340 RNA5SP66-201ENST00000517178 101 ntBASIC-0.15□□□□□ -2.43
HLA-DOAP06340 RNA5SP169-201ENST00000517268 117 ntBASIC-0.15□□□□□ -2.43
HLA-DOAP06340 MIR3938-201ENST00000582157 103 ntBASIC-0.15□□□□□ -2.43
HLA-DOAP06340 MIR6851-201ENST00000617060 67 ntBASIC-0.15□□□□□ -2.43
HLA-DOAP06340 SNORA18.1-201ENST00000363418 128 ntBASIC-0.16□□□□□ -2.44
HLA-DOAP06340 MIR329-2-201ENST00000385029 84 ntBASIC-0.16□□□□□ -2.44
HLA-DOAP06340 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.17□□□□□ -2.44
HLA-DOAP06340 SNORD4A-201ENST00000459174 72 ntBASIC-0.17□□□□□ -2.44
HLA-DOAP06340 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.18□□□□□ -2.44
HLA-DOAP06340 RNU6-231P-201ENST00000517122 103 ntBASIC-0.18□□□□□ -2.44
HLA-DOAP06340 MIR4788-201ENST00000639104 80 ntBASIC-0.18□□□□□ -2.44
HLA-DOAP06340 RNU6-829P-201ENST00000363700 112 ntBASIC-0.19□□□□□ -2.44
HLA-DOAP06340 RNU6-172P-201ENST00000411000 93 ntBASIC-0.19□□□□□ -2.44
HLA-DOAP06340 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.19□□□□□ -2.44
HLA-DOAP06340 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.19□□□□□ -2.44
HLA-DOAP06340 MIR579-201ENST00000385221 98 ntBASIC-0.2□□□□□ -2.44
HLA-DOAP06340 SNORD116.2-201ENST00000391251 93 ntBASIC-0.2□□□□□ -2.44
HLA-DOAP06340 MIR3666-201ENST00000607845 111 ntBASIC-0.2□□□□□ -2.44
HLA-DOAP06340 RNU6-499P-201ENST00000365615 107 ntBASIC-0.21□□□□□ -2.44
HLA-DOAP06340 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.21□□□□□ -2.44
HLA-DOAP06340 SNORD22.1-201ENST00000516331 125 ntBASIC-0.21□□□□□ -2.44
HLA-DOAP06340 AC093726.3-201ENST00000637588 150 ntBASIC-0.21□□□□□ -2.44
HLA-DOAP06340 MIR429-201ENST00000362106 83 ntBASIC-0.22□□□□□ -2.44
HLA-DOAP06340 MIR4263-201ENST00000584745 83 ntBASIC-0.22□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 164 ms