Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC104408.1-201ENST00000605241 170 ntBASIC0.16□□□□□ -2.38
LIMCH1Q9UPQ0 MIR664A-201ENST00000626086 82 ntBASIC0.16□□□□□ -2.38
LIMCH1Q9UPQ0 RNU6-411P-201ENST00000384451 107 ntBASIC0.15□□□□□ -2.39
LIMCH1Q9UPQ0 Z95118.1-201ENST00000421372 247 ntBASIC0.15□□□□□ -2.39
LIMCH1Q9UPQ0 snoU13.13-201ENST00000458842 104 ntBASIC0.15□□□□□ -2.39
LIMCH1Q9UPQ0 AC021146.9-201ENST00000512503 156 ntBASIC0.15□□□□□ -2.39
LIMCH1Q9UPQ0 RNU6-638P-201ENST00000516582 104 ntBASIC0.15□□□□□ -2.39
LIMCH1Q9UPQ0 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.15□□□□□ -2.39
LIMCH1Q9UPQ0 MIR4802-201ENST00000581881 80 ntBASIC0.15□□□□□ -2.39
LIMCH1Q9UPQ0 MIR8053-201ENST00000613344 75 ntBASIC0.15□□□□□ -2.39
LIMCH1Q9UPQ0 Y_RNA.788-201ENST00000622394 112 ntBASIC0.15□□□□□ -2.39
LIMCH1Q9UPQ0 MIR6739-201ENST00000622461 75 ntBASIC0.15□□□□□ -2.39
LIMCH1Q9UPQ0 Y_RNA.185-201ENST00000363894 100 ntBASIC0.14□□□□□ -2.39
LIMCH1Q9UPQ0 SNORD114-9-201ENST00000364370 72 ntBASIC0.14□□□□□ -2.39
LIMCH1Q9UPQ0 RNU6-1036P-201ENST00000383959 104 ntBASIC0.14□□□□□ -2.39
LIMCH1Q9UPQ0 RNU6-1162P-201ENST00000384443 104 ntBASIC0.14□□□□□ -2.39
LIMCH1Q9UPQ0 MIR4768-201ENST00000585270 74 ntBASIC0.14□□□□□ -2.39
LIMCH1Q9UPQ0 RNA5SP98-201ENST00000363158 137 ntBASIC0.13□□□□□ -2.39
LIMCH1Q9UPQ0 MIR521-2-201ENST00000384818 87 ntBASIC0.13□□□□□ -2.39
LIMCH1Q9UPQ0 CR383656.4-201ENST00000546909 122 ntBASIC0.13□□□□□ -2.39
LIMCH1Q9UPQ0 RNU6-776P-201ENST00000364403 104 ntBASIC0.12□□□□□ -2.39
LIMCH1Q9UPQ0 RNU6-1022P-201ENST00000365049 104 ntBASIC0.12□□□□□ -2.39
LIMCH1Q9UPQ0 MIR593-201ENST00000384856 100 ntBASIC0.12□□□□□ -2.39
LIMCH1Q9UPQ0 MIR145-201ENST00000384967 88 ntBASIC0.12□□□□□ -2.39
LIMCH1Q9UPQ0 RNA5SP163-201ENST00000410304 99 ntBASIC0.12□□□□□ -2.39
LIMCH1Q9UPQ0 RNA5SP25-201ENST00000410815 110 ntBASIC0.12□□□□□ -2.39
LIMCH1Q9UPQ0 RNU6-687P-201ENST00000516443 89 ntBASIC0.12□□□□□ -2.39
LIMCH1Q9UPQ0 RNU6-1241P-201ENST00000384536 107 ntBASIC0.11□□□□□ -2.39
LIMCH1Q9UPQ0 RNU6-587P-201ENST00000391282 106 ntBASIC0.11□□□□□ -2.39
LIMCH1Q9UPQ0 MIR6514-201ENST00000622549 70 ntBASIC0.11□□□□□ -2.39
LIMCH1Q9UPQ0 SNORD115-22-201ENST00000364456 82 ntBASIC0.1□□□□□ -2.39
LIMCH1Q9UPQ0 MIR154-201ENST00000385243 84 ntBASIC0.1□□□□□ -2.39
LIMCH1Q9UPQ0 RNU6-604P-201ENST00000390917 100 ntBASIC0.1□□□□□ -2.39
LIMCH1Q9UPQ0 RNU7-165P-201ENST00000458864 60 ntBASIC0.1□□□□□ -2.39
LIMCH1Q9UPQ0 U6.96-201ENST00000636425 70 ntBASIC0.1□□□□□ -2.39
LIMCH1Q9UPQ0 MIR371B-201ENST00000638082 66 ntBASIC0.1□□□□□ -2.39
LIMCH1Q9UPQ0 SNORD114-5-201ENST00000362928 70 ntBASIC0.09□□□□□ -2.4
LIMCH1Q9UPQ0 Y_RNA.545-201ENST00000384652 105 ntBASIC0.09□□□□□ -2.4
LIMCH1Q9UPQ0 SNORA49-201ENST00000386157 136 ntBASIC0.09□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-758P-201ENST00000516292 89 ntBASIC0.09□□□□□ -2.4
LIMCH1Q9UPQ0 SNORD115-25-201ENST00000362619 82 ntBASIC0.08□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-645P-201ENST00000364649 106 ntBASIC0.08□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-30P-201ENST00000384561 107 ntBASIC0.08□□□□□ -2.4
LIMCH1Q9UPQ0 MIR889-201ENST00000401280 79 ntBASIC0.08□□□□□ -2.4
LIMCH1Q9UPQ0 MIR148A-201ENST00000362215 68 ntBASIC0.07□□□□□ -2.4
LIMCH1Q9UPQ0 SNORD113.1-201ENST00000363280 73 ntBASIC0.07□□□□□ -2.4
LIMCH1Q9UPQ0 RNU7-159P-201ENST00000459284 62 ntBASIC0.07□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-523P-201ENST00000516304 54 ntBASIC0.07□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-656P-201ENST00000516785 107 ntBASIC0.07□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-1015P-201ENST00000517121 99 ntBASIC0.07□□□□□ -2.4
LIMCH1Q9UPQ0 IGLVI-20-201ENST00000519296 130 ntBASIC0.07□□□□□ -2.4
LIMCH1Q9UPQ0 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.06□□□□□ -2.4
LIMCH1Q9UPQ0 SNORD114-15-201ENST00000364687 72 ntBASIC0.06□□□□□ -2.4
LIMCH1Q9UPQ0 SNORA33.1-201ENST00000364957 130 ntBASIC0.06□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-502P-201ENST00000362419 108 ntBASIC0.05□□□□□ -2.4
LIMCH1Q9UPQ0 SNORD114-16-201ENST00000363044 70 ntBASIC0.05□□□□□ -2.4
LIMCH1Q9UPQ0 RNA5SP368-201ENST00000364298 116 ntBASIC0.05□□□□□ -2.4
LIMCH1Q9UPQ0 SNORD45A-201ENST00000384512 84 ntBASIC0.05□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-982P-201ENST00000516216 102 ntBASIC0.05□□□□□ -2.4
LIMCH1Q9UPQ0 AP000676.1-201ENST00000533307 52 ntBASIC0.05□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-1216P-201ENST00000362590 107 ntBASIC0.04□□□□□ -2.4
LIMCH1Q9UPQ0 SNORD114-31-201ENST00000363219 75 ntBASIC0.04□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-337P-201ENST00000391243 106 ntBASIC0.04□□□□□ -2.4
LIMCH1Q9UPQ0 MTND4LP1-201ENST00000446263 157 ntBASIC0.04□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-634P-201ENST00000459134 106 ntBASIC0.04□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-881P-201ENST00000516813 102 ntBASIC0.04□□□□□ -2.4
LIMCH1Q9UPQ0 MIR6773-201ENST00000612812 74 ntBASIC0.04□□□□□ -2.4
LIMCH1Q9UPQ0 SNORD115-31-201ENST00000365318 82 ntBASIC0.03□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-895P-201ENST00000384125 103 ntBASIC0.03□□□□□ -2.4
LIMCH1Q9UPQ0 AC104692.1-201ENST00000472406 90 ntBASIC0.03□□□□□ -2.4
LIMCH1Q9UPQ0 RNU6-871P-201ENST00000516122 100 ntBASIC0.03□□□□□ -2.4
LIMCH1Q9UPQ0 CYP3A54P-201ENST00000566950 75 ntBASIC0.03□□□□□ -2.4
LIMCH1Q9UPQ0 MIR4667-201ENST00000578933 66 ntBASIC0.03□□□□□ -2.4
LIMCH1Q9UPQ0 MIR4290-201ENST00000583807 95 ntBASIC0.03□□□□□ -2.4
LIMCH1Q9UPQ0 MIR6507-201ENST00000613630 70 ntBASIC0.03□□□□□ -2.4
LIMCH1Q9UPQ0 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.02□□□□□ -2.41
LIMCH1Q9UPQ0 RNU6-668P-201ENST00000364180 107 ntBASIC0.01□□□□□ -2.41
LIMCH1Q9UPQ0 RNA5SP331-201ENST00000364986 107 ntBASIC0.01□□□□□ -2.41
LIMCH1Q9UPQ0 RNU6-46P-201ENST00000383860 107 ntBASIC0.01□□□□□ -2.41
LIMCH1Q9UPQ0 RNU6-1296P-201ENST00000383879 107 ntBASIC0.01□□□□□ -2.41
LIMCH1Q9UPQ0 Y_RNA.565-201ENST00000384719 101 ntBASIC0.01□□□□□ -2.41
LIMCH1Q9UPQ0 RNU6-302P-201ENST00000365249 107 ntBASIC0□□□□□ -2.41
LIMCH1Q9UPQ0 RNU6-900P-201ENST00000384498 102 ntBASIC0□□□□□ -2.41
LIMCH1Q9UPQ0 MIR604-201ENST00000384880 94 ntBASIC0□□□□□ -2.41
LIMCH1Q9UPQ0 MIR4493-201ENST00000584016 73 ntBASIC0□□□□□ -2.41
LIMCH1Q9UPQ0 AP001180.6-201ENST00000584918 159 ntBASIC0□□□□□ -2.41
LIMCH1Q9UPQ0 RNU6-929P-201ENST00000384429 107 ntBASIC-0.01□□□□□ -2.41
LIMCH1Q9UPQ0 AC090617.8-201ENST00000623339 167 ntBASIC-0.01□□□□□ -2.41
LIMCH1Q9UPQ0 MIR1295B-201ENST00000636144 60 ntBASIC-0.01□□□□□ -2.41
LIMCH1Q9UPQ0 RNU6-540P-201ENST00000384622 101 ntBASIC-0.02□□□□□ -2.41
LIMCH1Q9UPQ0 MIRLET7B-201ENST00000385140 83 ntBASIC-0.02□□□□□ -2.41
LIMCH1Q9UPQ0 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.02□□□□□ -2.41
LIMCH1Q9UPQ0 RNA5SP470-201ENST00000516463 106 ntBASIC-0.02□□□□□ -2.41
LIMCH1Q9UPQ0 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.02□□□□□ -2.41
LIMCH1Q9UPQ0 AC108676.2-201ENST00000605225 163 ntBASIC-0.02□□□□□ -2.41
LIMCH1Q9UPQ0 RNU6-455P-201ENST00000384681 107 ntBASIC-0.03□□□□□ -2.41
LIMCH1Q9UPQ0 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.03□□□□□ -2.41
LIMCH1Q9UPQ0 MIR1255B2-201ENST00000408618 67 ntBASIC-0.03□□□□□ -2.41
LIMCH1Q9UPQ0 RNU7-55P-201ENST00000459426 62 ntBASIC-0.03□□□□□ -2.41
LIMCH1Q9UPQ0 RNA5SP215-201ENST00000363440 122 ntBASIC-0.04□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 171.6 ms