Protein–RNA interactions for Protein: Q9NV64

TMEM39A, Transmembrane protein 39A, humanhuman

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39AQ9NV64 MIR1265-201ENST00000408444 86 ntBASIC0.6□□□□□ -2.31
TMEM39AQ9NV64 SNORD2-201ENST00000459163 69 ntBASIC0.6□□□□□ -2.31
TMEM39AQ9NV64 MIR3925-201ENST00000584674 77 ntBASIC0.6□□□□□ -2.31
TMEM39AQ9NV64 AC243829.6-201ENST00000612652 106 ntBASIC0.6□□□□□ -2.31
TMEM39AQ9NV64 SNORA9.1-201ENST00000362412 131 ntBASIC0.59□□□□□ -2.31
TMEM39AQ9NV64 Y_RNA.375-201ENST00000365625 101 ntBASIC0.59□□□□□ -2.31
TMEM39AQ9NV64 RNU6-175P-201ENST00000516896 107 ntBASIC0.59□□□□□ -2.31
TMEM39AQ9NV64 RNA5SP215-201ENST00000363440 122 ntBASIC0.58□□□□□ -2.32
TMEM39AQ9NV64 MIR876-201ENST00000401147 81 ntBASIC0.57□□□□□ -2.32
TMEM39AQ9NV64 AC114737.2-201ENST00000421583 173 ntBASIC0.57□□□□□ -2.32
TMEM39AQ9NV64 RNU6-542P-201ENST00000516405 103 ntBASIC0.57□□□□□ -2.32
TMEM39AQ9NV64 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.57□□□□□ -2.32
TMEM39AQ9NV64 MIR4511-201ENST00000582784 87 ntBASIC0.57□□□□□ -2.32
TMEM39AQ9NV64 AC103706.3-201ENST00000636297 85 ntBASIC0.57□□□□□ -2.32
TMEM39AQ9NV64 MIR2909-201ENST00000617113 69 ntBASIC0.56□□□□□ -2.32
TMEM39AQ9NV64 VTRNA1-3-201ENST00000365645 89 ntBASIC0.55□□□□□ -2.32
TMEM39AQ9NV64 RNU6-1036P-201ENST00000383959 104 ntBASIC0.55□□□□□ -2.32
TMEM39AQ9NV64 RNU6-815P-201ENST00000384080 113 ntBASIC0.55□□□□□ -2.32
TMEM39AQ9NV64 MIR92A1-201ENST00000385233 78 ntBASIC0.55□□□□□ -2.32
TMEM39AQ9NV64 SNORA49-201ENST00000386157 136 ntBASIC0.55□□□□□ -2.32
TMEM39AQ9NV64 RNA5SP299-201ENST00000391203 116 ntBASIC0.55□□□□□ -2.32
TMEM39AQ9NV64 SCARNA11.2-201ENST00000517183 154 ntBASIC0.55□□□□□ -2.32
TMEM39AQ9NV64 MIR548V-201ENST00000584165 80 ntBASIC0.55□□□□□ -2.32
TMEM39AQ9NV64 RN7SL660P-201ENST00000614852 299 ntBASIC0.55□□□□□ -2.32
TMEM39AQ9NV64 U2.7-201ENST00000619197 100 ntBASIC0.55□□□□□ -2.32
TMEM39AQ9NV64 uc_338.17-201ENST00000619633 179 ntBASIC0.55□□□□□ -2.32
TMEM39AQ9NV64 CYP3A54P-201ENST00000566950 75 ntBASIC0.54□□□□□ -2.32
TMEM39AQ9NV64 SNORA75.1-201ENST00000391130 148 ntBASIC0.53□□□□□ -2.32
TMEM39AQ9NV64 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.52□□□□□ -2.33
TMEM39AQ9NV64 RNU6-127P-201ENST00000390897 107 ntBASIC0.52□□□□□ -2.33
TMEM39AQ9NV64 SNORA62.5-201ENST00000516634 120 ntBASIC0.52□□□□□ -2.33
TMEM39AQ9NV64 MIR4514-201ENST00000581410 57 ntBASIC0.52□□□□□ -2.33
TMEM39AQ9NV64 AC090617.8-201ENST00000623339 167 ntBASIC0.52□□□□□ -2.33
TMEM39AQ9NV64 RNU6-302P-201ENST00000365249 107 ntBASIC0.5□□□□□ -2.33
TMEM39AQ9NV64 MIR517B-201ENST00000385102 67 ntBASIC0.5□□□□□ -2.33
TMEM39AQ9NV64 AC090625.1-201ENST00000357130 210 ntBASIC0.49□□□□□ -2.33
TMEM39AQ9NV64 SNORA50A-201ENST00000384225 134 ntBASIC0.49□□□□□ -2.33
TMEM39AQ9NV64 RNU6-782P-201ENST00000516852 104 ntBASIC0.49□□□□□ -2.33
TMEM39AQ9NV64 AC069113.3-201ENST00000521019 150 ntBASIC0.49□□□□□ -2.33
TMEM39AQ9NV64 MIR6773-201ENST00000612812 74 ntBASIC0.49□□□□□ -2.33
TMEM39AQ9NV64 MIR9-2-201ENST00000384838 87 ntBASIC0.48□□□□□ -2.33
TMEM39AQ9NV64 RNU7-174P-201ENST00000516248 59 ntBASIC0.48□□□□□ -2.33
TMEM39AQ9NV64 MIR630-201ENST00000384957 97 ntBASIC0.47□□□□□ -2.33
TMEM39AQ9NV64 MIR643-201ENST00000385267 97 ntBASIC0.47□□□□□ -2.33
TMEM39AQ9NV64 RNU6-337P-201ENST00000391243 106 ntBASIC0.47□□□□□ -2.33
TMEM39AQ9NV64 SCARNA21.1-201ENST00000515996 128 ntBASIC0.47□□□□□ -2.33
TMEM39AQ9NV64 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
TMEM39AQ9NV64 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.46□□□□□ -2.34
TMEM39AQ9NV64 SNORD115-25-201ENST00000362619 82 ntBASIC0.46□□□□□ -2.34
TMEM39AQ9NV64 MIR106A-201ENST00000384870 81 ntBASIC0.46□□□□□ -2.34
TMEM39AQ9NV64 RNA5SP63-201ENST00000391225 112 ntBASIC0.46□□□□□ -2.34
TMEM39AQ9NV64 MIR1255B2-201ENST00000408618 67 ntBASIC0.46□□□□□ -2.34
TMEM39AQ9NV64 RNU6-698P-201ENST00000363523 107 ntBASIC0.45□□□□□ -2.34
TMEM39AQ9NV64 RNU6-34P-201ENST00000364874 107 ntBASIC0.45□□□□□ -2.34
TMEM39AQ9NV64 RNU6-1327P-201ENST00000365302 105 ntBASIC0.45□□□□□ -2.34
TMEM39AQ9NV64 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.45□□□□□ -2.34
TMEM39AQ9NV64 RNA5SP476-201ENST00000516613 103 ntBASIC0.45□□□□□ -2.34
TMEM39AQ9NV64 RNU6-35P-201ENST00000384530 107 ntBASIC0.44□□□□□ -2.34
TMEM39AQ9NV64 AL021921.1-201ENST00000442774 93 ntBASIC0.44□□□□□ -2.34
TMEM39AQ9NV64 AC108740.1-201ENST00000498629 225 ntBASIC0.44□□□□□ -2.34
TMEM39AQ9NV64 RNU6-518P-201ENST00000516056 96 ntBASIC0.44□□□□□ -2.34
TMEM39AQ9NV64 AC023932.2-201ENST00000603176 175 ntBASIC0.44□□□□□ -2.34
TMEM39AQ9NV64 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.43□□□□□ -2.34
TMEM39AQ9NV64 RNU6-502P-201ENST00000362419 108 ntBASIC0.43□□□□□ -2.34
TMEM39AQ9NV64 MIR548H2-201ENST00000408874 88 ntBASIC0.43□□□□□ -2.34
TMEM39AQ9NV64 AC110620.1-201ENST00000416042 228 ntBASIC0.43□□□□□ -2.34
TMEM39AQ9NV64 AP000676.1-201ENST00000533307 52 ntBASIC0.43□□□□□ -2.34
TMEM39AQ9NV64 SNORD113-2-201ENST00000391082 72 ntBASIC0.42□□□□□ -2.34
TMEM39AQ9NV64 SNORA25.5-201ENST00000363782 126 ntBASIC0.41□□□□□ -2.34
TMEM39AQ9NV64 RNU6-669P-201ENST00000365575 107 ntBASIC0.41□□□□□ -2.34
TMEM39AQ9NV64 MIRLET7B-201ENST00000385140 83 ntBASIC0.41□□□□□ -2.34
TMEM39AQ9NV64 RNA5SP98-201ENST00000363158 137 ntBASIC0.4□□□□□ -2.35
TMEM39AQ9NV64 RNA5SP285-201ENST00000516619 119 ntBASIC0.4□□□□□ -2.35
TMEM39AQ9NV64 RNU6-92P-201ENST00000605893 104 ntBASIC0.4□□□□□ -2.35
TMEM39AQ9NV64 U4.4-201ENST00000620626 117 ntBASIC0.4□□□□□ -2.35
TMEM39AQ9NV64 Y_RNA.246-201ENST00000364495 108 ntBASIC0.39□□□□□ -2.35
TMEM39AQ9NV64 MIR519A2-201ENST00000384990 87 ntBASIC0.39□□□□□ -2.35
TMEM39AQ9NV64 MIR6514-201ENST00000622549 70 ntBASIC0.39□□□□□ -2.35
TMEM39AQ9NV64 MIR4315-1-201ENST00000636800 73 ntBASIC0.39□□□□□ -2.35
TMEM39AQ9NV64 MIR4315-2-201ENST00000640925 73 ntBASIC0.39□□□□□ -2.35
TMEM39AQ9NV64 RNA5SP192-201ENST00000364404 120 ntBASIC0.38□□□□□ -2.35
TMEM39AQ9NV64 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.38□□□□□ -2.35
TMEM39AQ9NV64 HAR1A.1-201ENST00000459583 118 ntBASIC0.37□□□□□ -2.35
TMEM39AQ9NV64 Y_RNA.325-201ENST00000365171 122 ntBASIC0.36□□□□□ -2.35
TMEM39AQ9NV64 RNA5SP163-201ENST00000410304 99 ntBASIC0.36□□□□□ -2.35
TMEM39AQ9NV64 RNA5SP470-201ENST00000516463 106 ntBASIC0.36□□□□□ -2.35
TMEM39AQ9NV64 RNA5SP134-201ENST00000516492 96 ntBASIC0.36□□□□□ -2.35
TMEM39AQ9NV64 MIR892B-201ENST00000401279 77 ntBASIC0.35□□□□□ -2.35
TMEM39AQ9NV64 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.35□□□□□ -2.35
TMEM39AQ9NV64 SNORA42.1-201ENST00000363515 137 ntBASIC0.34□□□□□ -2.36
TMEM39AQ9NV64 MIR610-201ENST00000385139 96 ntBASIC0.34□□□□□ -2.36
TMEM39AQ9NV64 RNU6-1246P-201ENST00000391064 107 ntBASIC0.34□□□□□ -2.36
TMEM39AQ9NV64 CR383656.4-201ENST00000546909 122 ntBASIC0.34□□□□□ -2.36
TMEM39AQ9NV64 RNU6-940P-201ENST00000363433 104 ntBASIC0.33□□□□□ -2.36
TMEM39AQ9NV64 RNU6-180P-201ENST00000516697 61 ntBASIC0.33□□□□□ -2.36
TMEM39AQ9NV64 MIR4743-201ENST00000584576 69 ntBASIC0.33□□□□□ -2.36
TMEM39AQ9NV64 MIR148A-201ENST00000362215 68 ntBASIC0.32□□□□□ -2.36
TMEM39AQ9NV64 MIR593-201ENST00000384856 100 ntBASIC0.32□□□□□ -2.36
TMEM39AQ9NV64 RNU7-154P-201ENST00000516194 62 ntBASIC0.32□□□□□ -2.36
TMEM39AQ9NV64 AC104408.1-201ENST00000605241 170 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 176.8 ms