Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 Y_RNA.250-201ENST00000364542 110 ntBASIC0.07□□□□□ -2.4
MMP28Q9H239 SNORA33.1-201ENST00000364957 130 ntBASIC0.07□□□□□ -2.4
MMP28Q9H239 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.07□□□□□ -2.4
MMP28Q9H239 AP000676.1-201ENST00000533307 52 ntBASIC0.07□□□□□ -2.4
MMP28Q9H239 CR383656.4-201ENST00000546909 122 ntBASIC0.07□□□□□ -2.4
MMP28Q9H239 MIR6739-201ENST00000622461 75 ntBASIC0.07□□□□□ -2.4
MMP28Q9H239 MIR371B-201ENST00000638082 66 ntBASIC0.07□□□□□ -2.4
MMP28Q9H239 RNA5SP98-201ENST00000363158 137 ntBASIC0.06□□□□□ -2.4
MMP28Q9H239 SNORD45A-201ENST00000384512 84 ntBASIC0.06□□□□□ -2.4
MMP28Q9H239 RNU6-35P-201ENST00000384530 107 ntBASIC0.06□□□□□ -2.4
MMP28Q9H239 MIR329-2-201ENST00000385029 84 ntBASIC0.06□□□□□ -2.4
MMP28Q9H239 RNU6-587P-201ENST00000391282 106 ntBASIC0.06□□□□□ -2.4
MMP28Q9H239 RNU7-159P-201ENST00000459284 62 ntBASIC0.06□□□□□ -2.4
MMP28Q9H239 RNU6-982P-201ENST00000516216 102 ntBASIC0.06□□□□□ -2.4
MMP28Q9H239 SNORD115-25-201ENST00000362619 82 ntBASIC0.05□□□□□ -2.4
MMP28Q9H239 RNU6-645P-201ENST00000364649 106 ntBASIC0.05□□□□□ -2.4
MMP28Q9H239 RNU6-411P-201ENST00000384451 107 ntBASIC0.05□□□□□ -2.4
MMP28Q9H239 MIR521-2-201ENST00000384818 87 ntBASIC0.05□□□□□ -2.4
MMP28Q9H239 RNU7-165P-201ENST00000458864 60 ntBASIC0.05□□□□□ -2.4
MMP28Q9H239 SNORD2-201ENST00000459163 69 ntBASIC0.05□□□□□ -2.4
MMP28Q9H239 RNU6-687P-201ENST00000516443 89 ntBASIC0.05□□□□□ -2.4
MMP28Q9H239 RNU6-638P-201ENST00000516582 104 ntBASIC0.05□□□□□ -2.4
MMP28Q9H239 RNU6-656P-201ENST00000516785 107 ntBASIC0.05□□□□□ -2.4
MMP28Q9H239 RNU6-1015P-201ENST00000517121 99 ntBASIC0.05□□□□□ -2.4
MMP28Q9H239 MIR4743-201ENST00000584576 69 ntBASIC0.05□□□□□ -2.4
MMP28Q9H239 AC090617.8-201ENST00000623339 167 ntBASIC0.05□□□□□ -2.4
MMP28Q9H239 U6.96-201ENST00000636425 70 ntBASIC0.05□□□□□ -2.4
MMP28Q9H239 SNORA15B-2-201ENST00000384058 135 ntBASIC0.04□□□□□ -2.4
MMP28Q9H239 SNORA15B-1-201ENST00000384334 135 ntBASIC0.04□□□□□ -2.4
MMP28Q9H239 RNU6-929P-201ENST00000384429 107 ntBASIC0.04□□□□□ -2.4
MMP28Q9H239 RNU6-1162P-201ENST00000384443 104 ntBASIC0.04□□□□□ -2.4
MMP28Q9H239 MIR154-201ENST00000385243 84 ntBASIC0.04□□□□□ -2.4
MMP28Q9H239 MIR148A-201ENST00000362215 68 ntBASIC0.03□□□□□ -2.4
MMP28Q9H239 RNU6-776P-201ENST00000364403 104 ntBASIC0.03□□□□□ -2.4
MMP28Q9H239 RNU6-1022P-201ENST00000365049 104 ntBASIC0.03□□□□□ -2.4
MMP28Q9H239 SNORD115-31-201ENST00000365318 82 ntBASIC0.03□□□□□ -2.4
MMP28Q9H239 Y_RNA.545-201ENST00000384652 105 ntBASIC0.03□□□□□ -2.4
MMP28Q9H239 RNU6-337P-201ENST00000391243 106 ntBASIC0.03□□□□□ -2.4
MMP28Q9H239 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.03□□□□□ -2.4
MMP28Q9H239 RNU6-523P-201ENST00000516304 54 ntBASIC0.03□□□□□ -2.4
MMP28Q9H239 MIR6773-201ENST00000612812 74 ntBASIC0.03□□□□□ -2.4
MMP28Q9H239 MIR8053-201ENST00000613344 75 ntBASIC0.03□□□□□ -2.4
MMP28Q9H239 MIR6507-201ENST00000613630 70 ntBASIC0.03□□□□□ -2.4
MMP28Q9H239 RNU6-502P-201ENST00000362419 108 ntBASIC0.02□□□□□ -2.41
MMP28Q9H239 SNORD113.1-201ENST00000363280 73 ntBASIC0.02□□□□□ -2.41
MMP28Q9H239 RNU6-881P-201ENST00000516813 102 ntBASIC0.02□□□□□ -2.41
MMP28Q9H239 MIR4662A-201ENST00000637499 67 ntBASIC0.02□□□□□ -2.41
MMP28Q9H239 MIR4290-201ENST00000583807 95 ntBASIC0.01□□□□□ -2.41
MMP28Q9H239 MIR6759-201ENST00000638110 65 ntBASIC0.01□□□□□ -2.41
MMP28Q9H239 SNORD114-16-201ENST00000363044 70 ntBASIC0□□□□□ -2.41
MMP28Q9H239 MIR4667-201ENST00000578933 66 ntBASIC0□□□□□ -2.41
MMP28Q9H239 Y_RNA.565-201ENST00000384719 101 ntBASIC-0.01□□□□□ -2.41
MMP28Q9H239 MIRLET7B-201ENST00000385140 83 ntBASIC-0.01□□□□□ -2.41
MMP28Q9H239 AC244250.2-201ENST00000418731 148 ntBASIC-0.01□□□□□ -2.41
MMP28Q9H239 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.02□□□□□ -2.41
MMP28Q9H239 RNU6-455P-201ENST00000384681 107 ntBASIC-0.02□□□□□ -2.41
MMP28Q9H239 CYP3A54P-201ENST00000566950 75 ntBASIC-0.02□□□□□ -2.41
MMP28Q9H239 RNU6-302P-201ENST00000365249 107 ntBASIC-0.03□□□□□ -2.41
MMP28Q9H239 RNU6-895P-201ENST00000384125 103 ntBASIC-0.03□□□□□ -2.41
MMP28Q9H239 MIR9-2-201ENST00000384838 87 ntBASIC-0.03□□□□□ -2.41
MMP28Q9H239 RNU6-634P-201ENST00000459134 106 ntBASIC-0.03□□□□□ -2.41
MMP28Q9H239 uc_338.36-201ENST00000622331 158 ntBASIC-0.03□□□□□ -2.41
MMP28Q9H239 MIR6086-201ENST00000638065 55 ntBASIC-0.03□□□□□ -2.41
MMP28Q9H239 MIR548C-201ENST00000384815 97 ntBASIC-0.04□□□□□ -2.42
MMP28Q9H239 MIR1265-201ENST00000408444 86 ntBASIC-0.04□□□□□ -2.42
MMP28Q9H239 MIR1255B2-201ENST00000408618 67 ntBASIC-0.04□□□□□ -2.42
MMP28Q9H239 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.04□□□□□ -2.42
MMP28Q9H239 MIR5589-201ENST00000579442 60 ntBASIC-0.04□□□□□ -2.42
MMP28Q9H239 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.05□□□□□ -2.42
MMP28Q9H239 MIR655-201ENST00000362159 97 ntBASIC-0.05□□□□□ -2.42
MMP28Q9H239 SNORD116-24-201ENST00000384549 92 ntBASIC-0.05□□□□□ -2.42
MMP28Q9H239 RNU6-540P-201ENST00000384622 101 ntBASIC-0.05□□□□□ -2.42
MMP28Q9H239 MTND4LP1-201ENST00000446263 157 ntBASIC-0.05□□□□□ -2.42
MMP28Q9H239 MIR4636-201ENST00000582271 80 ntBASIC-0.05□□□□□ -2.42
MMP28Q9H239 U2.7-201ENST00000619197 100 ntBASIC-0.05□□□□□ -2.42
MMP28Q9H239 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.05□□□□□ -2.42
MMP28Q9H239 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.06□□□□□ -2.42
MMP28Q9H239 RNU6-668P-201ENST00000364180 107 ntBASIC-0.06□□□□□ -2.42
MMP28Q9H239 SNORD49B-201ENST00000365172 72 ntBASIC-0.06□□□□□ -2.42
MMP28Q9H239 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.06□□□□□ -2.42
MMP28Q9H239 RNU7-55P-201ENST00000459426 62 ntBASIC-0.06□□□□□ -2.42
MMP28Q9H239 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.06□□□□□ -2.42
MMP28Q9H239 RNU6-46P-201ENST00000383860 107 ntBASIC-0.07□□□□□ -2.42
MMP28Q9H239 RNU6-1296P-201ENST00000383879 107 ntBASIC-0.07□□□□□ -2.42
MMP28Q9H239 RNU6-900P-201ENST00000384498 102 ntBASIC-0.07□□□□□ -2.42
MMP28Q9H239 RNA5SP476-201ENST00000516613 103 ntBASIC-0.07□□□□□ -2.42
MMP28Q9H239 SNORD114-31-201ENST00000363219 75 ntBASIC-0.08□□□□□ -2.42
MMP28Q9H239 SNORD115-23-201ENST00000364461 82 ntBASIC-0.08□□□□□ -2.42
MMP28Q9H239 HAR1A.1-201ENST00000459583 118 ntBASIC-0.08□□□□□ -2.42
MMP28Q9H239 RNU6-871P-201ENST00000516122 100 ntBASIC-0.08□□□□□ -2.42
MMP28Q9H239 IGLVI-20-201ENST00000519296 130 ntBASIC-0.08□□□□□ -2.42
MMP28Q9H239 MIR4802-201ENST00000581881 80 ntBASIC-0.08□□□□□ -2.42
MMP28Q9H239 RNU6-663P-201ENST00000391105 106 ntBASIC-0.09□□□□□ -2.42
MMP28Q9H239 AC104692.1-201ENST00000472406 90 ntBASIC-0.09□□□□□ -2.42
MMP28Q9H239 RNU6-518P-201ENST00000516056 96 ntBASIC-0.09□□□□□ -2.42
MMP28Q9H239 AL391099.1-201ENST00000624635 187 ntBASIC-0.09□□□□□ -2.42
MMP28Q9H239 snoR1.1-201ENST00000628177 80 ntBASIC-0.09□□□□□ -2.42
MMP28Q9H239 SNORD114-12-201ENST00000365400 75 ntBASIC-0.1□□□□□ -2.43
MMP28Q9H239 SNORD56B-201ENST00000384713 71 ntBASIC-0.1□□□□□ -2.43
MMP28Q9H239 MIR519A2-201ENST00000384990 87 ntBASIC-0.1□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 282 ms