Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 U2.7-201ENST00000619197 100 ntBASIC0.7□□□□□ -2.3
DEPDC4Q8N2C3 SNORD114-23-201ENST00000363536 72 ntBASIC0.69□□□□□ -2.3
DEPDC4Q8N2C3 MIR936-201ENST00000401264 98 ntBASIC0.69□□□□□ -2.3
DEPDC4Q8N2C3 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.69□□□□□ -2.3
DEPDC4Q8N2C3 MIR6835-201ENST00000621552 64 ntBASIC0.69□□□□□ -2.3
DEPDC4Q8N2C3 SNORD113-2-201ENST00000391082 72 ntBASIC0.68□□□□□ -2.3
DEPDC4Q8N2C3 SNORA75.1-201ENST00000391130 148 ntBASIC0.68□□□□□ -2.3
DEPDC4Q8N2C3 CYP3A54P-201ENST00000566950 75 ntBASIC0.68□□□□□ -2.3
DEPDC4Q8N2C3 MIR3925-201ENST00000584674 77 ntBASIC0.68□□□□□ -2.3
DEPDC4Q8N2C3 RNU6-698P-201ENST00000363523 107 ntBASIC0.67□□□□□ -2.3
DEPDC4Q8N2C3 RNU6-34P-201ENST00000364874 107 ntBASIC0.67□□□□□ -2.3
DEPDC4Q8N2C3 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
DEPDC4Q8N2C3 RNU7-129P-201ENST00000516128 62 ntBASIC0.67□□□□□ -2.3
DEPDC4Q8N2C3 RNA5SP330-201ENST00000517096 96 ntBASIC0.67□□□□□ -2.3
DEPDC4Q8N2C3 MIR499B-201ENST00000636498 73 ntBASIC0.67□□□□□ -2.3
DEPDC4Q8N2C3 AC090625.1-201ENST00000357130 210 ntBASIC0.66□□□□□ -2.3
DEPDC4Q8N2C3 RNU6-940P-201ENST00000363433 104 ntBASIC0.66□□□□□ -2.3
DEPDC4Q8N2C3 Y_RNA.433-201ENST00000384089 102 ntBASIC0.66□□□□□ -2.3
DEPDC4Q8N2C3 RNU7-174P-201ENST00000516248 59 ntBASIC0.66□□□□□ -2.3
DEPDC4Q8N2C3 MIR103A1-201ENST00000362165 78 ntBASIC0.65□□□□□ -2.31
DEPDC4Q8N2C3 MIR630-201ENST00000384957 97 ntBASIC0.65□□□□□ -2.31
DEPDC4Q8N2C3 SNORA49-201ENST00000386157 136 ntBASIC0.65□□□□□ -2.31
DEPDC4Q8N2C3 RNU6-92P-201ENST00000605893 104 ntBASIC0.65□□□□□ -2.31
DEPDC4Q8N2C3 MIR106A-201ENST00000384870 81 ntBASIC0.64□□□□□ -2.31
DEPDC4Q8N2C3 RNU6-782P-201ENST00000516852 104 ntBASIC0.64□□□□□ -2.31
DEPDC4Q8N2C3 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.64□□□□□ -2.31
DEPDC4Q8N2C3 RNA5SP192-201ENST00000364404 120 ntBASIC0.63□□□□□ -2.31
DEPDC4Q8N2C3 AL021921.1-201ENST00000442774 93 ntBASIC0.63□□□□□ -2.31
DEPDC4Q8N2C3 MIR8087-201ENST00000612745 78 ntBASIC0.63□□□□□ -2.31
DEPDC4Q8N2C3 AC243829.3-201ENST00000622177 108 ntBASIC0.63□□□□□ -2.31
DEPDC4Q8N2C3 RNA5SP257-201ENST00000363023 116 ntBASIC0.62□□□□□ -2.31
DEPDC4Q8N2C3 RNU6-499P-201ENST00000365615 107 ntBASIC0.62□□□□□ -2.31
DEPDC4Q8N2C3 MIR508-201ENST00000384857 115 ntBASIC0.62□□□□□ -2.31
DEPDC4Q8N2C3 uc_338.17-201ENST00000619633 179 ntBASIC0.62□□□□□ -2.31
DEPDC4Q8N2C3 MIR330-201ENST00000362196 94 ntBASIC0.61□□□□□ -2.31
DEPDC4Q8N2C3 RNU6-1036P-201ENST00000383959 104 ntBASIC0.61□□□□□ -2.31
DEPDC4Q8N2C3 SCARNA11.2-201ENST00000517183 154 ntBASIC0.61□□□□□ -2.31
DEPDC4Q8N2C3 MIR4711-201ENST00000578274 70 ntBASIC0.61□□□□□ -2.31
DEPDC4Q8N2C3 RN7SL660P-201ENST00000614852 299 ntBASIC0.61□□□□□ -2.31
DEPDC4Q8N2C3 RNA5SP193-201ENST00000410353 107 ntBASIC0.6□□□□□ -2.31
DEPDC4Q8N2C3 MIR466-201ENST00000580653 84 ntBASIC0.6□□□□□ -2.31
DEPDC4Q8N2C3 MIR6773-201ENST00000612812 74 ntBASIC0.6□□□□□ -2.31
DEPDC4Q8N2C3 RNA5SP347-201ENST00000362445 119 ntBASIC0.59□□□□□ -2.31
DEPDC4Q8N2C3 Y_RNA.246-201ENST00000364495 108 ntBASIC0.59□□□□□ -2.31
DEPDC4Q8N2C3 RNU6-1327P-201ENST00000365302 105 ntBASIC0.59□□□□□ -2.31
DEPDC4Q8N2C3 MIR1255B2-201ENST00000408618 67 ntBASIC0.59□□□□□ -2.31
DEPDC4Q8N2C3 RNU6-518P-201ENST00000516056 96 ntBASIC0.59□□□□□ -2.31
DEPDC4Q8N2C3 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.59□□□□□ -2.32
DEPDC4Q8N2C3 RNA5SP62-201ENST00000363457 110 ntBASIC0.58□□□□□ -2.32
DEPDC4Q8N2C3 RNU6-127P-201ENST00000390897 107 ntBASIC0.58□□□□□ -2.32
DEPDC4Q8N2C3 AC069113.3-201ENST00000521019 150 ntBASIC0.58□□□□□ -2.32
DEPDC4Q8N2C3 SNORD115-25-201ENST00000362619 82 ntBASIC0.57□□□□□ -2.32
DEPDC4Q8N2C3 RNU6-815P-201ENST00000384080 113 ntBASIC0.57□□□□□ -2.32
DEPDC4Q8N2C3 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
DEPDC4Q8N2C3 RNU6-337P-201ENST00000391243 106 ntBASIC0.57□□□□□ -2.32
DEPDC4Q8N2C3 RNU6-122P-201ENST00000516818 107 ntBASIC0.57□□□□□ -2.32
DEPDC4Q8N2C3 U4.4-201ENST00000620626 117 ntBASIC0.57□□□□□ -2.32
DEPDC4Q8N2C3 AC090617.8-201ENST00000623339 167 ntBASIC0.57□□□□□ -2.32
DEPDC4Q8N2C3 RNA5SP470-201ENST00000516463 106 ntBASIC0.56□□□□□ -2.32
DEPDC4Q8N2C3 RNU6-502P-201ENST00000362419 108 ntBASIC0.55□□□□□ -2.32
DEPDC4Q8N2C3 SNORD60.1-201ENST00000362451 73 ntBASIC0.54□□□□□ -2.32
DEPDC4Q8N2C3 MIR5087-201ENST00000635826 76 ntBASIC0.54□□□□□ -2.32
DEPDC4Q8N2C3 MIRLET7B-201ENST00000385140 83 ntBASIC0.53□□□□□ -2.32
DEPDC4Q8N2C3 MIR1197-201ENST00000408818 88 ntBASIC0.53□□□□□ -2.32
DEPDC4Q8N2C3 MIR633-201ENST00000384821 98 ntBASIC0.52□□□□□ -2.33
DEPDC4Q8N2C3 MIR519A2-201ENST00000384990 87 ntBASIC0.52□□□□□ -2.33
DEPDC4Q8N2C3 MIR892B-201ENST00000401279 77 ntBASIC0.52□□□□□ -2.33
DEPDC4Q8N2C3 AC108740.1-201ENST00000498629 225 ntBASIC0.52□□□□□ -2.33
DEPDC4Q8N2C3 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.52□□□□□ -2.33
DEPDC4Q8N2C3 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.52□□□□□ -2.33
DEPDC4Q8N2C3 Y_RNA.74-201ENST00000362911 99 ntBASIC0.51□□□□□ -2.33
DEPDC4Q8N2C3 RNA5SP98-201ENST00000363158 137 ntBASIC0.51□□□□□ -2.33
DEPDC4Q8N2C3 Y_RNA.325-201ENST00000365171 122 ntBASIC0.51□□□□□ -2.33
DEPDC4Q8N2C3 RNU7-154P-201ENST00000516194 62 ntBASIC0.51□□□□□ -2.33
DEPDC4Q8N2C3 MIR4315-1-201ENST00000636800 73 ntBASIC0.51□□□□□ -2.33
DEPDC4Q8N2C3 MIR4315-2-201ENST00000640925 73 ntBASIC0.51□□□□□ -2.33
DEPDC4Q8N2C3 MTND4LP19-201ENST00000403051 166 ntBASIC0.5□□□□□ -2.33
DEPDC4Q8N2C3 MIR3938-201ENST00000582157 103 ntBASIC0.5□□□□□ -2.33
DEPDC4Q8N2C3 RNU6-1079P-201ENST00000362861 110 ntBASIC0.49□□□□□ -2.33
DEPDC4Q8N2C3 RNA5SP476-201ENST00000516613 103 ntBASIC0.49□□□□□ -2.33
DEPDC4Q8N2C3 AP000676.1-201ENST00000533307 52 ntBASIC0.49□□□□□ -2.33
DEPDC4Q8N2C3 MIR4743-201ENST00000584576 69 ntBASIC0.49□□□□□ -2.33
DEPDC4Q8N2C3 AC079150.2-201ENST00000443733 78 ntBASIC0.47□□□□□ -2.33
DEPDC4Q8N2C3 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.47□□□□□ -2.33
DEPDC4Q8N2C3 CR383656.4-201ENST00000546909 122 ntBASIC0.47□□□□□ -2.33
DEPDC4Q8N2C3 RNA5SP499-201ENST00000363982 119 ntBASIC0.46□□□□□ -2.34
DEPDC4Q8N2C3 MIR527-201ENST00000385244 85 ntBASIC0.46□□□□□ -2.34
DEPDC4Q8N2C3 RNU6-1246P-201ENST00000391064 107 ntBASIC0.46□□□□□ -2.34
DEPDC4Q8N2C3 AC114737.2-201ENST00000421583 173 ntBASIC0.46□□□□□ -2.34
DEPDC4Q8N2C3 MIR148A-201ENST00000362215 68 ntBASIC0.45□□□□□ -2.34
DEPDC4Q8N2C3 SNORA50A-201ENST00000384225 134 ntBASIC0.45□□□□□ -2.34
DEPDC4Q8N2C3 MIR643-201ENST00000385267 97 ntBASIC0.45□□□□□ -2.34
DEPDC4Q8N2C3 MIR2909-201ENST00000617113 69 ntBASIC0.45□□□□□ -2.34
DEPDC4Q8N2C3 snoR1.1-201ENST00000628177 80 ntBASIC0.45□□□□□ -2.34
DEPDC4Q8N2C3 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.44□□□□□ -2.34
DEPDC4Q8N2C3 RNU6-180P-201ENST00000516697 61 ntBASIC0.44□□□□□ -2.34
DEPDC4Q8N2C3 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.44□□□□□ -2.34
DEPDC4Q8N2C3 MIR429-201ENST00000362106 83 ntBASIC0.43□□□□□ -2.34
DEPDC4Q8N2C3 VTRNA1-3-201ENST00000365645 89 ntBASIC0.43□□□□□ -2.34
DEPDC4Q8N2C3 MIR548H2-201ENST00000408874 88 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 233.3 ms