Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AL590491.3-201ENST00000610731 82 ntBASIC-0.27□□□□□ -2.45
HDAC4P56524 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.27□□□□□ -2.45
HDAC4P56524 RNY1P1-201ENST00000364372 112 ntBASIC-0.28□□□□□ -2.45
HDAC4P56524 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.28□□□□□ -2.45
HDAC4P56524 IGLL4P-201ENST00000614590 133 ntBASIC-0.28□□□□□ -2.45
HDAC4P56524 SNORA2.1-201ENST00000363089 137 ntBASIC-0.29□□□□□ -2.46
HDAC4P56524 RNU6-681P-201ENST00000364012 104 ntBASIC-0.29□□□□□ -2.46
HDAC4P56524 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.29□□□□□ -2.46
HDAC4P56524 RNA5SP147-201ENST00000516493 109 ntBASIC-0.29□□□□□ -2.46
HDAC4P56524 RNY1P9-201ENST00000532431 109 ntBASIC-0.29□□□□□ -2.46
HDAC4P56524 MIR4723-201ENST00000585070 81 ntBASIC-0.29□□□□□ -2.46
HDAC4P56524 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.3□□□□□ -2.46
HDAC4P56524 RNU7-55P-201ENST00000459426 62 ntBASIC-0.3□□□□□ -2.46
HDAC4P56524 RNU6-752P-201ENST00000516376 102 ntBASIC-0.3□□□□□ -2.46
HDAC4P56524 MIR6773-201ENST00000612812 74 ntBASIC-0.3□□□□□ -2.46
HDAC4P56524 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.31□□□□□ -2.46
HDAC4P56524 RNU6-129P-201ENST00000391022 107 ntBASIC-0.31□□□□□ -2.46
HDAC4P56524 SNX3P1X-201ENST00000414887 175 ntBASIC-0.31□□□□□ -2.46
HDAC4P56524 RNU6-320P-201ENST00000516511 106 ntBASIC-0.31□□□□□ -2.46
HDAC4P56524 RNA5SP170-201ENST00000517150 101 ntBASIC-0.31□□□□□ -2.46
HDAC4P56524 AC090617.8-201ENST00000623339 167 ntBASIC-0.31□□□□□ -2.46
HDAC4P56524 MIR494-201ENST00000349529 81 ntBASIC-0.32□□□□□ -2.46
HDAC4P56524 RNA5SP275-201ENST00000363936 118 ntBASIC-0.32□□□□□ -2.46
HDAC4P56524 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.32□□□□□ -2.46
HDAC4P56524 RNU6-686P-201ENST00000364839 107 ntBASIC-0.32□□□□□ -2.46
HDAC4P56524 MIR1468-201ENST00000410600 86 ntBASIC-0.32□□□□□ -2.46
HDAC4P56524 AC096531.1-201ENST00000419107 107 ntBASIC-0.32□□□□□ -2.46
HDAC4P56524 AC022137.1-201ENST00000483735 151 ntBASIC-0.32□□□□□ -2.46
HDAC4P56524 MIR548AX-201ENST00000580117 73 ntBASIC-0.32□□□□□ -2.46
HDAC4P56524 SNORD56B-201ENST00000384713 71 ntBASIC-0.33□□□□□ -2.46
HDAC4P56524 MIR4788-201ENST00000639104 80 ntBASIC-0.33□□□□□ -2.46
HDAC4P56524 RNU6-330P-201ENST00000363015 107 ntBASIC-0.34□□□□□ -2.46
HDAC4P56524 SNORD14C-201ENST00000365382 88 ntBASIC-0.34□□□□□ -2.46
HDAC4P56524 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.34□□□□□ -2.46
HDAC4P56524 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.34□□□□□ -2.46
HDAC4P56524 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.34□□□□□ -2.46
HDAC4P56524 SNORA32.3-201ENST00000384772 121 ntBASIC-0.34□□□□□ -2.46
HDAC4P56524 MIR450A2-201ENST00000385022 100 ntBASIC-0.34□□□□□ -2.46
HDAC4P56524 MIRLET7B-201ENST00000385140 83 ntBASIC-0.34□□□□□ -2.46
HDAC4P56524 RNU4-63P-201ENST00000411313 118 ntBASIC-0.34□□□□□ -2.46
HDAC4P56524 AC074348.1-201ENST00000426503 132 ntBASIC-0.34□□□□□ -2.46
HDAC4P56524 RNU7-171P-201ENST00000459581 62 ntBASIC-0.34□□□□□ -2.46
HDAC4P56524 SNORA33.1-201ENST00000364957 130 ntBASIC-0.35□□□□□ -2.47
HDAC4P56524 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.35□□□□□ -2.47
HDAC4P56524 RNU6-303P-201ENST00000517091 106 ntBASIC-0.35□□□□□ -2.47
HDAC4P56524 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.36□□□□□ -2.47
HDAC4P56524 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.36□□□□□ -2.47
HDAC4P56524 RNA5SP66-201ENST00000517178 101 ntBASIC-0.36□□□□□ -2.47
HDAC4P56524 AC062037.1-201ENST00000605302 128 ntBASIC-0.36□□□□□ -2.47
HDAC4P56524 RNU6-973P-201ENST00000364690 107 ntBASIC-0.37□□□□□ -2.47
HDAC4P56524 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.37□□□□□ -2.47
HDAC4P56524 U6.96-201ENST00000636425 70 ntBASIC-0.37□□□□□ -2.47
HDAC4P56524 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.38□□□□□ -2.47
HDAC4P56524 SNORD114-11-201ENST00000363738 75 ntBASIC-0.38□□□□□ -2.47
HDAC4P56524 SNORD115-23-201ENST00000364461 82 ntBASIC-0.38□□□□□ -2.47
HDAC4P56524 RNU6-901P-201ENST00000384593 106 ntBASIC-0.38□□□□□ -2.47
HDAC4P56524 SNORD126-201ENST00000459475 77 ntBASIC-0.38□□□□□ -2.47
HDAC4P56524 uc_338.36-201ENST00000622331 158 ntBASIC-0.38□□□□□ -2.47
HDAC4P56524 MIR6739-201ENST00000622461 75 ntBASIC-0.38□□□□□ -2.47
HDAC4P56524 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.39□□□□□ -2.47
HDAC4P56524 SNORD75.1-201ENST00000408373 60 ntBASIC-0.39□□□□□ -2.47
HDAC4P56524 MIR4280-201ENST00000582178 76 ntBASIC-0.39□□□□□ -2.47
HDAC4P56524 RNU6-315P-201ENST00000362666 107 ntBASIC-0.4□□□□□ -2.47
HDAC4P56524 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.4□□□□□ -2.47
HDAC4P56524 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.4□□□□□ -2.47
HDAC4P56524 MIR548AZ-201ENST00000616567 95 ntBASIC-0.4□□□□□ -2.47
HDAC4P56524 AL391099.1-201ENST00000624635 187 ntBASIC-0.4□□□□□ -2.47
HDAC4P56524 AC093726.3-201ENST00000637588 150 ntBASIC-0.4□□□□□ -2.47
HDAC4P56524 RNU6-787P-201ENST00000384032 107 ntBASIC-0.41□□□□□ -2.48
HDAC4P56524 MIR521-2-201ENST00000384818 87 ntBASIC-0.41□□□□□ -2.48
HDAC4P56524 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.41□□□□□ -2.48
HDAC4P56524 MIR4432-201ENST00000581823 84 ntBASIC-0.41□□□□□ -2.48
HDAC4P56524 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.42□□□□□ -2.48
HDAC4P56524 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.42□□□□□ -2.48
HDAC4P56524 SNORA8.1-201ENST00000384250 140 ntBASIC-0.43□□□□□ -2.48
HDAC4P56524 MIR196A2-201ENST00000385189 110 ntBASIC-0.43□□□□□ -2.48
HDAC4P56524 AL445193.1-201ENST00000441183 141 ntBASIC-0.43□□□□□ -2.48
HDAC4P56524 MIR4666B-201ENST00000578142 81 ntBASIC-0.43□□□□□ -2.48
HDAC4P56524 MIR4484-201ENST00000582855 83 ntBASIC-0.43□□□□□ -2.48
HDAC4P56524 MIR3675-201ENST00000583661 73 ntBASIC-0.43□□□□□ -2.48
HDAC4P56524 MIR4712-201ENST00000583750 82 ntBASIC-0.43□□□□□ -2.48
HDAC4P56524 MIR5704-201ENST00000584029 77 ntBASIC-0.43□□□□□ -2.48
HDAC4P56524 MIR6851-201ENST00000617060 67 ntBASIC-0.43□□□□□ -2.48
HDAC4P56524 snoR1.1-201ENST00000628177 80 ntBASIC-0.43□□□□□ -2.48
HDAC4P56524 SNORD73B-201ENST00000364394 72 ntBASIC-0.44□□□□□ -2.48
HDAC4P56524 RNU6-820P-201ENST00000384273 107 ntBASIC-0.44□□□□□ -2.48
HDAC4P56524 RNU6-1152P-201ENST00000384576 107 ntBASIC-0.44□□□□□ -2.48
HDAC4P56524 RNU6-284P-201ENST00000411105 106 ntBASIC-0.44□□□□□ -2.48
HDAC4P56524 MIR1245B-201ENST00000636115 69 ntBASIC-0.44□□□□□ -2.48
HDAC4P56524 Y_RNA.43-201ENST00000362670 111 ntBASIC-0.45□□□□□ -2.48
HDAC4P56524 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.45□□□□□ -2.48
HDAC4P56524 RNU6-380P-201ENST00000410207 107 ntBASIC-0.45□□□□□ -2.48
HDAC4P56524 RNU6-656P-201ENST00000516785 107 ntBASIC-0.45□□□□□ -2.48
HDAC4P56524 CYP3A54P-201ENST00000566950 75 ntBASIC-0.45□□□□□ -2.48
HDAC4P56524 MIR3681-201ENST00000580089 72 ntBASIC-0.45□□□□□ -2.48
HDAC4P56524 MIR8068-201ENST00000618032 68 ntBASIC-0.45□□□□□ -2.48
HDAC4P56524 MIR1297-201ENST00000637311 77 ntBASIC-0.45□□□□□ -2.48
HDAC4P56524 SNORD114-14-201ENST00000362723 75 ntBASIC-0.46□□□□□ -2.48
HDAC4P56524 RNU6-242P-201ENST00000384359 107 ntBASIC-0.46□□□□□ -2.48
HDAC4P56524 SNORA13-201ENST00000458790 133 ntBASIC-0.46□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 174.4 ms