Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 SNORD12-201ENST00000391002 90 ntBASIC1.61□□□□□ -2.15
GFRA3O60609 MIR548J-201ENST00000408833 112 ntBASIC1.61□□□□□ -2.15
GFRA3O60609 AL356379.1-201ENST00000414105 126 ntBASIC1.61□□□□□ -2.15
GFRA3O60609 SNORA70.22-201ENST00000517160 124 ntBASIC1.61□□□□□ -2.15
GFRA3O60609 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
GFRA3O60609 SNORA16.1-201ENST00000364597 132 ntBASIC1.6□□□□□ -2.15
GFRA3O60609 SNORD114-29-201ENST00000364819 70 ntBASIC1.6□□□□□ -2.15
GFRA3O60609 RNA5SP364-201ENST00000516938 78 ntBASIC1.6□□□□□ -2.15
GFRA3O60609 MIR4426-201ENST00000640330 63 ntBASIC1.6□□□□□ -2.15
GFRA3O60609 MIR17-201ENST00000385012 84 ntBASIC1.59□□□□□ -2.15
GFRA3O60609 MIR1468-201ENST00000410600 86 ntBASIC1.59□□□□□ -2.15
GFRA3O60609 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.59□□□□□ -2.15
GFRA3O60609 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.59□□□□□ -2.15
GFRA3O60609 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.16
GFRA3O60609 RNA5SP233-201ENST00000459153 113 ntBASIC1.58□□□□□ -2.16
GFRA3O60609 MIR4464-201ENST00000580818 92 ntBASIC1.58□□□□□ -2.16
GFRA3O60609 RNU6-300P-201ENST00000459080 104 ntBASIC1.57□□□□□ -2.16
GFRA3O60609 RNA5SP436-201ENST00000516020 115 ntBASIC1.57□□□□□ -2.16
GFRA3O60609 RNU7-188P-201ENST00000517063 64 ntBASIC1.57□□□□□ -2.16
GFRA3O60609 SNORA31.24-201ENST00000517232 57 ntBASIC1.57□□□□□ -2.16
GFRA3O60609 MIR4448-201ENST00000584360 86 ntBASIC1.57□□□□□ -2.16
GFRA3O60609 MIR6888-201ENST00000621977 67 ntBASIC1.57□□□□□ -2.16
GFRA3O60609 MIR216A-201ENST00000385063 110 ntBASIC1.56□□□□□ -2.16
GFRA3O60609 RNA5SP489-201ENST00000410986 109 ntBASIC1.56□□□□□ -2.16
GFRA3O60609 uc_338.20-201ENST00000621563 178 ntBASIC1.56□□□□□ -2.16
GFRA3O60609 SNORD114-27-201ENST00000363766 70 ntBASIC1.55□□□□□ -2.16
GFRA3O60609 MIR5706-201ENST00000579841 80 ntBASIC1.55□□□□□ -2.16
GFRA3O60609 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.55□□□□□ -2.16
GFRA3O60609 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC1.54□□□□□ -2.16
GFRA3O60609 RNU6-1036P-201ENST00000383959 104 ntBASIC1.53□□□□□ -2.16
GFRA3O60609 MIR1323-201ENST00000408090 73 ntBASIC1.53□□□□□ -2.16
GFRA3O60609 MIR548T-201ENST00000408369 74 ntBASIC1.53□□□□□ -2.16
GFRA3O60609 MIR4419B-201ENST00000577260 68 ntBASIC1.53□□□□□ -2.16
GFRA3O60609 MIR4422-201ENST00000581938 83 ntBASIC1.53□□□□□ -2.16
GFRA3O60609 AL096840.1-201ENST00000603287 93 ntBASIC1.53□□□□□ -2.16
GFRA3O60609 AC104408.1-201ENST00000605241 170 ntBASIC1.53□□□□□ -2.16
GFRA3O60609 MIR18A-201ENST00000362310 71 ntBASIC1.52□□□□□ -2.17
GFRA3O60609 RNU6-361P-201ENST00000364454 107 ntBASIC1.52□□□□□ -2.17
GFRA3O60609 HMGN2P19-201ENST00000425149 265 ntBASIC1.52□□□□□ -2.17
GFRA3O60609 RNA5SP476-201ENST00000516613 103 ntBASIC1.52□□□□□ -2.17
GFRA3O60609 RNA5SP457-201ENST00000363657 124 ntBASIC1.51□□□□□ -2.17
GFRA3O60609 RNA5SP363-201ENST00000365072 115 ntBASIC1.51□□□□□ -2.17
GFRA3O60609 MIR676-201ENST00000390702 67 ntBASIC1.51□□□□□ -2.17
GFRA3O60609 RNU6-1111P-201ENST00000391118 107 ntBASIC1.51□□□□□ -2.17
GFRA3O60609 RNU6-1238P-201ENST00000517215 102 ntBASIC1.51□□□□□ -2.17
GFRA3O60609 AL445584.3-201ENST00000617173 78 ntBASIC1.51□□□□□ -2.17
GFRA3O60609 MIR520D-201ENST00000385002 87 ntBASIC1.5□□□□□ -2.17
GFRA3O60609 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.5□□□□□ -2.17
GFRA3O60609 FABP5P4-201ENST00000437203 171 ntBASIC1.5□□□□□ -2.17
GFRA3O60609 MIR3198-2-201ENST00000577868 80 ntBASIC1.5□□□□□ -2.17
GFRA3O60609 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.5□□□□□ -2.17
GFRA3O60609 SNORA27.2-201ENST00000363365 126 ntBASIC1.49□□□□□ -2.17
GFRA3O60609 RNU6-1091P-201ENST00000363945 107 ntBASIC1.49□□□□□ -2.17
GFRA3O60609 HAR1A.1-201ENST00000459583 118 ntBASIC1.48□□□□□ -2.17
GFRA3O60609 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
GFRA3O60609 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
GFRA3O60609 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.46□□□□□ -2.18
GFRA3O60609 MIR193B-201ENST00000384907 83 ntBASIC1.46□□□□□ -2.18
GFRA3O60609 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
GFRA3O60609 Y_RNA.613-201ENST00000410726 97 ntBASIC1.46□□□□□ -2.18
GFRA3O60609 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC1.46□□□□□ -2.18
GFRA3O60609 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.46□□□□□ -2.18
GFRA3O60609 SNORD48-201ENST00000364953 64 ntBASIC1.45□□□□□ -2.18
GFRA3O60609 MIR222-201ENST00000384992 110 ntBASIC1.45□□□□□ -2.18
GFRA3O60609 RN7SL660P-201ENST00000614852 299 ntBASIC1.45□□□□□ -2.18
GFRA3O60609 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.45□□□□□ -2.18
GFRA3O60609 AC069271.1-201ENST00000445577 156 ntBASIC1.44□□□□□ -2.18
GFRA3O60609 RNU6-1232P-201ENST00000516299 86 ntBASIC1.44□□□□□ -2.18
GFRA3O60609 Y_RNA.699-201ENST00000516803 93 ntBASIC1.44□□□□□ -2.18
GFRA3O60609 MIR1273G-201ENST00000577677 100 ntBASIC1.44□□□□□ -2.18
GFRA3O60609 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
GFRA3O60609 Y_RNA.115-201ENST00000363272 98 ntBASIC1.43□□□□□ -2.18
GFRA3O60609 SNORA25-201ENST00000384384 134 ntBASIC1.43□□□□□ -2.18
GFRA3O60609 AC008834.1-201ENST00000511612 175 ntBASIC1.43□□□□□ -2.18
GFRA3O60609 MIR202-201ENST00000362219 110 ntBASIC1.42□□□□□ -2.18
GFRA3O60609 RNU1-124P-201ENST00000363861 145 ntBASIC1.42□□□□□ -2.18
GFRA3O60609 MIR3122-201ENST00000577243 73 ntBASIC1.42□□□□□ -2.18
GFRA3O60609 MIR4677-201ENST00000584153 80 ntBASIC1.42□□□□□ -2.18
GFRA3O60609 MIR6767-201ENST00000637302 66 ntBASIC1.42□□□□□ -2.18
GFRA3O60609 RNY1P9-201ENST00000532431 109 ntBASIC1.41□□□□□ -2.18
GFRA3O60609 MIR5000-201ENST00000577717 103 ntBASIC1.41□□□□□ -2.18
GFRA3O60609 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
GFRA3O60609 MIR19B1-201ENST00000384829 87 ntBASIC1.4□□□□□ -2.19
GFRA3O60609 SNORD19-201ENST00000391191 68 ntBASIC1.4□□□□□ -2.19
GFRA3O60609 SNORA17.4-201ENST00000391287 132 ntBASIC1.4□□□□□ -2.19
GFRA3O60609 SNORD124-201ENST00000459577 104 ntBASIC1.4□□□□□ -2.19
GFRA3O60609 RNU6-732P-201ENST00000516033 103 ntBASIC1.4□□□□□ -2.19
GFRA3O60609 RNA5SP327-201ENST00000362494 101 ntBASIC1.39□□□□□ -2.19
GFRA3O60609 RNA5SP62-201ENST00000363457 110 ntBASIC1.39□□□□□ -2.19
GFRA3O60609 RNY3P8-201ENST00000411366 126 ntBASIC1.39□□□□□ -2.19
GFRA3O60609 AP000676.1-201ENST00000533307 52 ntBASIC1.39□□□□□ -2.19
GFRA3O60609 AC011195.1-201ENST00000578177 177 ntBASIC1.39□□□□□ -2.19
GFRA3O60609 snoR1.1-201ENST00000628177 80 ntBASIC1.39□□□□□ -2.19
GFRA3O60609 RNU4-45P-201ENST00000365469 141 ntBASIC1.38□□□□□ -2.19
GFRA3O60609 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
GFRA3O60609 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
GFRA3O60609 AL590095.2-201ENST00000604136 117 ntBASIC1.38□□□□□ -2.19
GFRA3O60609 U7.6-201ENST00000610841 64 ntBASIC1.38□□□□□ -2.19
GFRA3O60609 Y_RNA.519-201ENST00000384553 102 ntBASIC1.37□□□□□ -2.19
GFRA3O60609 MIR1304-201ENST00000408243 91 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 7.1 ms