Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn11aQ9R053 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn11aQ9R053 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scn11aQ9R053 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn11aQ9R053 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scn11aQ9R053 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scn11aQ9R053 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn11aQ9R053 Gm7292-201ENSMUST00000194706 2527 ntBASIC18.8■□□□□ 0.6
Scn11aQ9R053 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC18.79■□□□□ 0.6
Scn11aQ9R053 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn11aQ9R053 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Gm11424-201ENSMUST00000121929 829 ntBASIC18.78■□□□□ 0.6
Scn11aQ9R053 AC160980.1-201ENSMUST00000224136 970 ntBASIC18.78■□□□□ 0.6
Scn11aQ9R053 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn11aQ9R053 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn11aQ9R053 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn11aQ9R053 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Scn11aQ9R053 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn11aQ9R053 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn11aQ9R053 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
Scn11aQ9R053 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Scn11aQ9R053 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC18.77■□□□□ 0.6
Scn11aQ9R053 Gm11025-201ENSMUST00000140773 466 ntBASIC18.77■□□□□ 0.6
Scn11aQ9R053 Gm43767-201ENSMUST00000198933 381 ntBASIC18.77■□□□□ 0.6
Scn11aQ9R053 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn11aQ9R053 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn11aQ9R053 Hist1h2al-201ENSMUST00000091708 339 ntBASIC18.77■□□□□ 0.6
Scn11aQ9R053 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scn11aQ9R053 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scn11aQ9R053 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scn11aQ9R053 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scn11aQ9R053 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC18.76■□□□□ 0.59
Scn11aQ9R053 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 AA543401-201ENSMUST00000164248 1269 ntBASIC18.76■□□□□ 0.59
Scn11aQ9R053 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Gm20949-201ENSMUST00000206478 952 ntBASIC18.76■□□□□ 0.59
Scn11aQ9R053 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn11aQ9R053 Arhgef33-209ENSMUST00000225223 714 ntBASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms