Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scn4aQ9ER60 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scn4aQ9ER60 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scn4aQ9ER60 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scn4aQ9ER60 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scn4aQ9ER60 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC21.7■■□□□ 1.06
Scn4aQ9ER60 Gm45668-201ENSMUST00000211271 493 ntBASIC21.7■■□□□ 1.06
Scn4aQ9ER60 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC21.7■■□□□ 1.06
Scn4aQ9ER60 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scn4aQ9ER60 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scn4aQ9ER60 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Scn4aQ9ER60 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Scn4aQ9ER60 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC21.7■■□□□ 1.06
Scn4aQ9ER60 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scn4aQ9ER60 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Gm42612-201ENSMUST00000197986 623 ntBASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Gm43170-201ENSMUST00000199827 612 ntBASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Gm9257-201ENSMUST00000221254 232 ntBASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Mir3547-201ENSMUST00000175461 88 ntBASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Gm2272-201ENSMUST00000194903 582 ntBASIC21.69■■□□□ 1.06
Scn4aQ9ER60 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Scn4aQ9ER60 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Scn4aQ9ER60 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Scn4aQ9ER60 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Scn4aQ9ER60 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
Scn4aQ9ER60 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Scn4aQ9ER60 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Scn4aQ9ER60 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Scn4aQ9ER60 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scn4aQ9ER60 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Scn4aQ9ER60 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC21.67■■□□□ 1.06
Scn4aQ9ER60 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Scn4aQ9ER60 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scn4aQ9ER60 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
Scn4aQ9ER60 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scn4aQ9ER60 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scn4aQ9ER60 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Scn4aQ9ER60 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scn4aQ9ER60 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scn4aQ9ER60 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Gm18766-201ENSMUST00000189811 808 ntBASIC21.66■■□□□ 1.06
Scn4aQ9ER60 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Grk6-207ENSMUST00000225925 2769 ntBASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC21.66■■□□□ 1.06
Scn4aQ9ER60 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Scn4aQ9ER60 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC21.65■■□□□ 1.06
Scn4aQ9ER60 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Scn4aQ9ER60 AC131068.2-201ENSMUST00000226175 1453 ntBASIC21.65■■□□□ 1.06
Scn4aQ9ER60 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Scn4aQ9ER60 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Scn4aQ9ER60 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Scn4aQ9ER60 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
Scn4aQ9ER60 AC130669.1-201ENSMUST00000228537 1672 ntBASIC21.64■■□□□ 1.06
Scn4aQ9ER60 Gm6539-201ENSMUST00000119157 1064 ntBASIC21.64■■□□□ 1.06
Scn4aQ9ER60 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC21.64■■□□□ 1.06
Scn4aQ9ER60 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
Scn4aQ9ER60 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Scn4aQ9ER60 Gm18049-201ENSMUST00000208909 581 ntBASIC21.64■■□□□ 1.06
Scn4aQ9ER60 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC21.64■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 65 ms