Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Gm12742-201ENSMUST00000117326 410 ntBASIC18.05■□□□□ 0.48
Upf1Q9EPU0 Gm6539-201ENSMUST00000119157 1064 ntBASIC18.05■□□□□ 0.48
Upf1Q9EPU0 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC18.05■□□□□ 0.48
Upf1Q9EPU0 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC18.05■□□□□ 0.48
Upf1Q9EPU0 Gm9257-201ENSMUST00000221254 232 ntBASIC18.05■□□□□ 0.48
Upf1Q9EPU0 AC107711.5-202ENSMUST00000226429 702 ntBASIC18.05■□□□□ 0.48
Upf1Q9EPU0 AC154231.1-201ENSMUST00000220564 2175 ntBASIC18.05■□□□□ 0.48
Upf1Q9EPU0 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Upf1Q9EPU0 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf1Q9EPU0 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf1Q9EPU0 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Upf1Q9EPU0 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC18.04■□□□□ 0.48
Upf1Q9EPU0 Gm44344-201ENSMUST00000200287 129 ntBASIC18.04■□□□□ 0.48
Upf1Q9EPU0 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf1Q9EPU0 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Upf1Q9EPU0 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf1Q9EPU0 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Upf1Q9EPU0 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf1Q9EPU0 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf1Q9EPU0 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf1Q9EPU0 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Upf1Q9EPU0 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf1Q9EPU0 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf1Q9EPU0 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.03■□□□□ 0.48
Upf1Q9EPU0 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC18.03■□□□□ 0.48
Upf1Q9EPU0 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Upf1Q9EPU0 Gm45668-201ENSMUST00000211271 493 ntBASIC18.03■□□□□ 0.48
Upf1Q9EPU0 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf1Q9EPU0 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf1Q9EPU0 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf1Q9EPU0 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Upf1Q9EPU0 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 Gm29667-201ENSMUST00000190817 490 ntBASIC18.02■□□□□ 0.48
Upf1Q9EPU0 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Upf1Q9EPU0 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Upf1Q9EPU0 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Upf1Q9EPU0 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Gm11543-201ENSMUST00000120758 370 ntBASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Upf1Q9EPU0 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Mir1247-201ENSMUST00000116706 82 ntBASIC18■□□□□ 0.47
Upf1Q9EPU0 Gm14042-201ENSMUST00000120139 833 ntBASIC18■□□□□ 0.47
Upf1Q9EPU0 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Upf1Q9EPU0 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC18■□□□□ 0.47
Upf1Q9EPU0 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC18■□□□□ 0.47
Upf1Q9EPU0 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC18■□□□□ 0.47
Upf1Q9EPU0 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC18■□□□□ 0.47
Upf1Q9EPU0 Gm15823-201ENSMUST00000064305 670 ntBASIC18■□□□□ 0.47
Upf1Q9EPU0 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 AC131068.2-201ENSMUST00000226175 1453 ntBASIC18■□□□□ 0.47
Upf1Q9EPU0 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC18■□□□□ 0.47
Upf1Q9EPU0 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms