Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Gm34391-201ENSMUST00000203706 907 ntBASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Smc1aQ9CU62 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Smc1aQ9CU62 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Smc1aQ9CU62 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Smc1aQ9CU62 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC17.83■□□□□ 0.45
Smc1aQ9CU62 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Smc1aQ9CU62 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Gm15794-201ENSMUST00000120182 631 ntBASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Gm28659-201ENSMUST00000188013 759 ntBASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Birc2-201ENSMUST00000054878 378 ntBASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms