Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm19164-201ENSMUST00000210667 640 ntBASIC16.8■□□□□ 0.28
Clp1Q99LI9 AC139382.1-201ENSMUST00000221402 498 ntBASIC16.8■□□□□ 0.28
Clp1Q99LI9 AC151836.1-202ENSMUST00000226259 753 ntBASIC16.8■□□□□ 0.28
Clp1Q99LI9 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Gm13294-201ENSMUST00000121757 1330 ntBASIC16.79■□□□□ 0.28
Clp1Q99LI9 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Gm13616-201ENSMUST00000120600 222 ntBASIC16.79■□□□□ 0.28
Clp1Q99LI9 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Mir7036b-201ENSMUST00000184791 63 ntBASIC16.79■□□□□ 0.28
Clp1Q99LI9 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Clp1Q99LI9 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Gm15427-201ENSMUST00000117288 531 ntBASIC16.78■□□□□ 0.28
Clp1Q99LI9 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC16.78■□□□□ 0.28
Clp1Q99LI9 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC16.78■□□□□ 0.28
Clp1Q99LI9 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Gm45747-201ENSMUST00000212203 999 ntBASIC16.78■□□□□ 0.28
Clp1Q99LI9 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Clp1Q99LI9 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC16.77■□□□□ 0.28
Clp1Q99LI9 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Gm5177-201ENSMUST00000183092 997 ntBASIC16.77■□□□□ 0.28
Clp1Q99LI9 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC16.77■□□□□ 0.28
Clp1Q99LI9 AC155252.2-201ENSMUST00000226946 680 ntBASIC16.77■□□□□ 0.28
Clp1Q99LI9 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clp1Q99LI9 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Clp1Q99LI9 Gm43702-201ENSMUST00000198772 2546 ntBASIC16.77■□□□□ 0.28
Clp1Q99LI9 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC16.77■□□□□ 0.27
Clp1Q99LI9 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Clp1Q99LI9 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Clp1Q99LI9 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC16.77■□□□□ 0.27
Clp1Q99LI9 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Clp1Q99LI9 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Clp1Q99LI9 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clp1Q99LI9 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Gm12892-201ENSMUST00000117367 1146 ntBASIC16.76■□□□□ 0.27
Clp1Q99LI9 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms