Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps53Q8CCB4 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps53Q8CCB4 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps53Q8CCB4 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC18.56■□□□□ 0.56
Vps53Q8CCB4 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps53Q8CCB4 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
Vps53Q8CCB4 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Vps53Q8CCB4 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Gm18733-201ENSMUST00000173950 856 ntBASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 AW822252-206ENSMUST00000208904 237 ntBASIC18.55■□□□□ 0.56
Vps53Q8CCB4 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps53Q8CCB4 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Gm10052-201ENSMUST00000168019 960 ntBASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Gm18195-201ENSMUST00000207604 706 ntBASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Gm7729-201ENSMUST00000050143 801 ntBASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC18.54■□□□□ 0.56
Vps53Q8CCB4 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Gm11452-201ENSMUST00000122376 690 ntBASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps53Q8CCB4 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Gm15372-201ENSMUST00000120729 834 ntBASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Gm18421-201ENSMUST00000204122 625 ntBASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 AC125350.1-201ENSMUST00000225115 903 ntBASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps53Q8CCB4 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms