Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf3Q8C120 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Gm7977-201ENSMUST00000193787 748 ntBASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Ntrk2-205ENSMUST00000224402 2284 ntBASIC16.65■□□□□ 0.26
Sh3rf3Q8C120 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Sh3rf3Q8C120 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Sh3rf3Q8C120 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf3Q8C120 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf3Q8C120 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Gm7284-201ENSMUST00000131667 944 ntBASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Gm27704-201ENSMUST00000185094 107 ntBASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 AC130713.1-201ENSMUST00000228853 1096 ntBASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf3Q8C120 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms