Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ccdc40Q8BI79 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ccdc40Q8BI79 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ccdc40Q8BI79 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ccdc40Q8BI79 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ccdc40Q8BI79 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ccdc40Q8BI79 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ccdc40Q8BI79 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ccdc40Q8BI79 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ccdc40Q8BI79 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ccdc40Q8BI79 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Gm10231-201ENSMUST00000181584 441 ntBASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Gm10175-202ENSMUST00000208752 441 ntBASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc40Q8BI79 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc40Q8BI79 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Gm36967-201ENSMUST00000193814 266 ntBASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Zkscan3-208ENSMUST00000224820 5398 ntBASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc40Q8BI79 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc40Q8BI79 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc40Q8BI79 Gm37912-201ENSMUST00000191895 3076 ntBASIC16.65■□□□□ 0.26
Ccdc40Q8BI79 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms