Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm13882-201ENSMUST00000120886 1002 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm10284-201ENSMUST00000145057 1005 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm10481-201ENSMUST00000179228 1002 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm2574-201ENSMUST00000181051 1002 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm3200-201ENSMUST00000181493 1002 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm8825-201ENSMUST00000182565 998 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm4518-201ENSMUST00000182638 718 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm8330-201ENSMUST00000182754 1008 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm4575-201ENSMUST00000182991 1002 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm8709-201ENSMUST00000183230 1012 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 AC164629.2-201ENSMUST00000217916 270 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Rbfox2-207ENSMUST00000227533 1041 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm10293-201ENSMUST00000076317 1002 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gm6316-201ENSMUST00000082064 1020 ntBASIC18.82■□□□□ 0.6
Trim56Q80VI1 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim56Q80VI1 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim56Q80VI1 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim56Q80VI1 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC18.81■□□□□ 0.6
Trim56Q80VI1 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim56Q80VI1 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC18.81■□□□□ 0.6
Trim56Q80VI1 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim56Q80VI1 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim56Q80VI1 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
Trim56Q80VI1 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim56Q80VI1 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim56Q80VI1 AC133598.3-202ENSMUST00000224219 531 ntBASIC18.81■□□□□ 0.6
Trim56Q80VI1 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim56Q80VI1 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim56Q80VI1 Gm38327-201ENSMUST00000195852 1755 ntBASIC18.81■□□□□ 0.6
Trim56Q80VI1 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Gm13418-201ENSMUST00000119097 944 ntBASIC18.8■□□□□ 0.6
Trim56Q80VI1 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Gm28659-201ENSMUST00000188013 759 ntBASIC18.8■□□□□ 0.6
Trim56Q80VI1 Gm37584-201ENSMUST00000193595 1290 ntBASIC18.8■□□□□ 0.6
Trim56Q80VI1 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Gm6376-201ENSMUST00000209407 580 ntBASIC18.8■□□□□ 0.6
Trim56Q80VI1 AC117588.1-201ENSMUST00000228510 999 ntBASIC18.8■□□□□ 0.6
Trim56Q80VI1 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Rps4l-201ENSMUST00000071745 943 ntBASIC18.8■□□□□ 0.6
Trim56Q80VI1 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim56Q80VI1 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC18.79■□□□□ 0.6
Trim56Q80VI1 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Gm11780-201ENSMUST00000136880 516 ntBASIC18.79■□□□□ 0.6
Trim56Q80VI1 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Gm6257-201ENSMUST00000163864 910 ntBASIC18.79■□□□□ 0.6
Trim56Q80VI1 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Gm18622-201ENSMUST00000219361 595 ntBASIC18.79■□□□□ 0.6
Trim56Q80VI1 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim56Q80VI1 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC18.78■□□□□ 0.6
Trim56Q80VI1 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim56Q80VI1 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms