Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Chd4Q6PDQ2 AC160980.1-201ENSMUST00000224136 970 ntBASIC20.7■□□□□ 0.9
Chd4Q6PDQ2 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Chd4Q6PDQ2 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Chd4Q6PDQ2 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chd4Q6PDQ2 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chd4Q6PDQ2 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Chd4Q6PDQ2 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chd4Q6PDQ2 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chd4Q6PDQ2 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC20.69■□□□□ 0.9
Chd4Q6PDQ2 Gm14722-201ENSMUST00000118943 689 ntBASIC20.69■□□□□ 0.9
Chd4Q6PDQ2 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC20.69■□□□□ 0.9
Chd4Q6PDQ2 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chd4Q6PDQ2 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chd4Q6PDQ2 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chd4Q6PDQ2 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Chd4Q6PDQ2 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chd4Q6PDQ2 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
Chd4Q6PDQ2 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Chd4Q6PDQ2 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 AC159114.1-201ENSMUST00000220349 266 ntBASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Chd4Q6PDQ2 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 Gm8318-201ENSMUST00000182954 872 ntBASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 Gm7669-201ENSMUST00000210184 1603 ntBASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd4Q6PDQ2 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Rpph1-201ENSMUST00000175096 319 ntBASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Gm37171-201ENSMUST00000192636 1185 ntBASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 AC139382.1-201ENSMUST00000221402 498 ntBASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Gm44729-201ENSMUST00000206759 2052 ntBASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Chd4Q6PDQ2 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Gm10576-201ENSMUST00000191927 825 ntBASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 CT025626.1-201ENSMUST00000223735 1455 ntBASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Chd4Q6PDQ2 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Chd4Q6PDQ2 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Chd4Q6PDQ2 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Chd4Q6PDQ2 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Chd4Q6PDQ2 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Chd4Q6PDQ2 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC20.64■□□□□ 0.89
Chd4Q6PDQ2 Gm16198-201ENSMUST00000118766 670 ntBASIC20.64■□□□□ 0.89
Chd4Q6PDQ2 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Chd4Q6PDQ2 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
Chd4Q6PDQ2 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Chd4Q6PDQ2 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms