Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC13.14□□□□□ -0.31
Col7a1Q63870 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col7a1Q63870 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col7a1Q63870 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col7a1Q63870 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col7a1Q63870 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col7a1Q63870 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC13.13□□□□□ -0.31
Col7a1Q63870 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Col7a1Q63870 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC13.13□□□□□ -0.31
Col7a1Q63870 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC13.13□□□□□ -0.31
Col7a1Q63870 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC13.13□□□□□ -0.31
Col7a1Q63870 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC13.13□□□□□ -0.31
Col7a1Q63870 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Gm4959-201ENSMUST00000197271 1044 ntBASIC13.13□□□□□ -0.31
Col7a1Q63870 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC13.13□□□□□ -0.31
Col7a1Q63870 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC13.13□□□□□ -0.31
Col7a1Q63870 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col7a1Q63870 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC13.13□□□□□ -0.31
Col7a1Q63870 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC13.12□□□□□ -0.31
Col7a1Q63870 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Gm11918-201ENSMUST00000121660 179 ntBASIC13.12□□□□□ -0.31
Col7a1Q63870 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Gm27533-201ENSMUST00000183800 152 ntBASIC13.12□□□□□ -0.31
Col7a1Q63870 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Col7a1Q63870 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
Col7a1Q63870 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Col7a1Q63870 Gm18018-201ENSMUST00000198273 408 ntBASIC13.12□□□□□ -0.31
Col7a1Q63870 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Col7a1Q63870 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col7a1Q63870 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Col7a1Q63870 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Col7a1Q63870 Gm6973-201ENSMUST00000117080 721 ntBASIC13.11□□□□□ -0.31
Col7a1Q63870 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC13.11□□□□□ -0.31
Col7a1Q63870 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC13.11□□□□□ -0.31
Col7a1Q63870 CT485787.1-201ENSMUST00000225617 968 ntBASIC13.11□□□□□ -0.31
Col7a1Q63870 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
Col7a1Q63870 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Shd-206ENSMUST00000225145 998 ntBASIC13.11□□□□□ -0.31
Col7a1Q63870 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col7a1Q63870 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col7a1Q63870 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col7a1Q63870 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col7a1Q63870 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC13.1□□□□□ -0.31
Col7a1Q63870 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC13.1□□□□□ -0.31
Col7a1Q63870 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC13.1□□□□□ -0.31
Col7a1Q63870 Gm37424-201ENSMUST00000191727 561 ntBASIC13.1□□□□□ -0.31
Col7a1Q63870 Gm42612-201ENSMUST00000197986 623 ntBASIC13.1□□□□□ -0.31
Col7a1Q63870 Gm43170-201ENSMUST00000199827 612 ntBASIC13.1□□□□□ -0.31
Col7a1Q63870 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Col7a1Q63870 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
Col7a1Q63870 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col7a1Q63870 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC13.1□□□□□ -0.31
Col7a1Q63870 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col7a1Q63870 Asic1-205ENSMUST00000228185 1818 ntBASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms