Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CtcfQ61164 AC159205.6-201ENSMUST00000224935 887 ntBASIC17.61■□□□□ 0.41
CtcfQ61164 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CtcfQ61164 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
CtcfQ61164 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CtcfQ61164 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CtcfQ61164 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CtcfQ61164 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CtcfQ61164 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CtcfQ61164 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CtcfQ61164 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC17.61■□□□□ 0.41
CtcfQ61164 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CtcfQ61164 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.6■□□□□ 0.41
CtcfQ61164 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.6■□□□□ 0.41
CtcfQ61164 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CtcfQ61164 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CtcfQ61164 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CtcfQ61164 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC17.6■□□□□ 0.41
CtcfQ61164 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CtcfQ61164 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC17.59■□□□□ 0.41
CtcfQ61164 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC17.59■□□□□ 0.41
CtcfQ61164 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CtcfQ61164 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC17.59■□□□□ 0.41
CtcfQ61164 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CtcfQ61164 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
CtcfQ61164 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
CtcfQ61164 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
CtcfQ61164 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CtcfQ61164 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.41
CtcfQ61164 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CtcfQ61164 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC17.58■□□□□ 0.41
CtcfQ61164 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CtcfQ61164 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CtcfQ61164 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CtcfQ61164 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CtcfQ61164 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CtcfQ61164 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CtcfQ61164 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CtcfQ61164 Gm16061-201ENSMUST00000122167 857 ntBASIC17.58■□□□□ 0.4
CtcfQ61164 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC17.58■□□□□ 0.4
CtcfQ61164 Mir5130-201ENSMUST00000175160 84 ntBASIC17.58■□□□□ 0.4
CtcfQ61164 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CtcfQ61164 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.58■□□□□ 0.4
CtcfQ61164 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CtcfQ61164 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CtcfQ61164 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CtcfQ61164 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CtcfQ61164 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CtcfQ61164 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CtcfQ61164 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CtcfQ61164 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CtcfQ61164 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CtcfQ61164 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CtcfQ61164 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CtcfQ61164 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CtcfQ61164 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC17.57■□□□□ 0.4
CtcfQ61164 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
CtcfQ61164 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC17.57■□□□□ 0.4
CtcfQ61164 Gm26039-201ENSMUST00000158152 144 ntBASIC17.57■□□□□ 0.4
CtcfQ61164 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CtcfQ61164 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC17.57■□□□□ 0.4
CtcfQ61164 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.57■□□□□ 0.4
CtcfQ61164 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC17.57■□□□□ 0.4
CtcfQ61164 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms