Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC15.55■□□□□ 0.08
Col28a1Q2UY11 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 Gm7638-201ENSMUST00000121348 967 ntBASIC15.55■□□□□ 0.08
Col28a1Q2UY11 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 App-207ENSMUST00000227737 2827 ntBASIC15.55■□□□□ 0.08
Col28a1Q2UY11 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col28a1Q2UY11 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Gm27463-201ENSMUST00000183569 57 ntBASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Gm33142-201ENSMUST00000193913 867 ntBASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col28a1Q2UY11 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Actl10-202ENSMUST00000226583 1501 ntBASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col28a1Q2UY11 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 AC163637.1-201ENSMUST00000215491 1894 ntBASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col28a1Q2UY11 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.07
Col28a1Q2UY11 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Col28a1Q2UY11 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col28a1Q2UY11 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Col28a1Q2UY11 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col28a1Q2UY11 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col28a1Q2UY11 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Gm6190-201ENSMUST00000220683 1374 ntBASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Mir5130-201ENSMUST00000175160 84 ntBASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms