Protein–RNA interactions for Protein: P97503

Nkx3-2, Homeobox protein Nkx-3.2, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-2P97503 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
Nkx3-2P97503 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC15.07■□□□□ 0
Nkx3-2P97503 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC15.07■□□□□ 0
Nkx3-2P97503 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Nkx3-2P97503 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC15.07■□□□□ 0
Nkx3-2P97503 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Nkx3-2P97503 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC15.07■□□□□ 0
Nkx3-2P97503 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nkx3-2P97503 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC15.06■□□□□ 0
Nkx3-2P97503 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nkx3-2P97503 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nkx3-2P97503 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Nkx3-2P97503 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nkx3-2P97503 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC15.06■□□□□ 0
Nkx3-2P97503 Gm5864-201ENSMUST00000202263 970 ntBASIC15.06■□□□□ 0
Nkx3-2P97503 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
Nkx3-2P97503 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Nkx3-2P97503 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nkx3-2P97503 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nkx3-2P97503 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Nkx3-2P97503 Gm32996-201ENSMUST00000199828 1447 ntBASIC15.06■□□□□ 0
Nkx3-2P97503 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC15.06■□□□□ 0
Nkx3-2P97503 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC15.06■□□□□ 0
Nkx3-2P97503 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Nkx3-2P97503 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Nkx3-2P97503 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC15.05■□□□□ 0
Nkx3-2P97503 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
Nkx3-2P97503 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Nkx3-2P97503 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC15.05■□□□□ -0
Nkx3-2P97503 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC15.05■□□□□ -0
Nkx3-2P97503 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC15.05■□□□□ -0
Nkx3-2P97503 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Nkx3-2P97503 Gm1818-201ENSMUST00000169406 1184 ntBASIC15.05■□□□□ -0
Nkx3-2P97503 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC15.05■□□□□ -0
Nkx3-2P97503 Gm44771-201ENSMUST00000206975 626 ntBASIC15.05■□□□□ -0
Nkx3-2P97503 Gm18195-201ENSMUST00000207604 706 ntBASIC15.05■□□□□ -0
Nkx3-2P97503 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC15.05■□□□□ -0
Nkx3-2P97503 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC15.05■□□□□ -0
Nkx3-2P97503 AC133598.3-202ENSMUST00000224219 531 ntBASIC15.05■□□□□ -0
Nkx3-2P97503 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Nkx3-2P97503 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC15.05■□□□□ -0
Nkx3-2P97503 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Nkx3-2P97503 Gm8839-201ENSMUST00000121279 1645 ntBASIC15.05■□□□□ -0
Nkx3-2P97503 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC15.05■□□□□ -0
Nkx3-2P97503 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Nkx3-2P97503 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Nkx3-2P97503 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Nkx3-2P97503 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.04■□□□□ -0
Nkx3-2P97503 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC15.04■□□□□ -0
Nkx3-2P97503 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Gm9889-202ENSMUST00000206983 1577 ntBASIC15.04■□□□□ -0
Nkx3-2P97503 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC15.04■□□□□ -0
Nkx3-2P97503 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC15.04■□□□□ -0
Nkx3-2P97503 AC127349.1-201ENSMUST00000224590 266 ntBASIC15.04■□□□□ -0
Nkx3-2P97503 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC15.04■□□□□ -0
Nkx3-2P97503 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC15.04■□□□□ -0
Nkx3-2P97503 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nkx3-2P97503 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Nkx3-2P97503 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Nkx3-2P97503 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Nkx3-2P97503 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
Nkx3-2P97503 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Nkx3-2P97503 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Nkx3-2P97503 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.03■□□□□ -0
Nkx3-2P97503 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Nkx3-2P97503 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Nkx3-2P97503 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Nkx3-2P97503 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Nkx3-2P97503 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Nkx3-2P97503 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
Nkx3-2P97503 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC15.03■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms